1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttttttgctgatttatatttacattaattctaagttctactgtatcgttttattccactcatggacatgaacaaagtttggtgtttcattttaatgctagATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTTTGGATTTTGTGAAAAAAATGATAGAAGATTTCAAGAATCAGAAATTCTT
species | Glycine max |
transcript | GLYMA08G42380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGAACAATAG ATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTTEST: gi|19268653|gb|BM884909.1|BM884909
genomic: AGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGAACAATAGgtaatatttt ... ttaatgctagATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTT
EST: AGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGAACAATAG ATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTT
genomic: AGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGAACAATAGgtaatatttt ... ttaatgctagATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTT
cgttttattccactcatggacatgaacaaagtttggtgtttcattttaatgctagATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTTTGGATTTTGTGAAAAAAATGATAGAAGATTTCAAGAATCAGAAATTCTT
ttttaat putative branch site (score: 3)
tttcatttt CT-rich tract
tgtttcattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttgctgatttatatttacattaattctaagttctactgtatcgttttattccactcatggacatgaacaaagtttggtgtttcattttaatgctagATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTTTGGATTTTGTGAAAAAAATGATAGAAGATTTCAAGAATCAGAAATTCTT
- - -tgctgat
- - - - - - - - - - - - - - - - - -tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg