1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccactgattgggaaaaattaaatgaatgtgatatcaaaatttattttatcaattcactaagttcttatgtgtttgattccttttactttatgccatgtagATGGATACTTTTAGAAGTGGTAGACAACATATTTCCAAGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTCGAG
species | Glycine max |
transcript | GLYMA08G41810.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGGAATTTCTACACATGTAAATAATATGTTTGAGGATGTCAGAAATGG ATGGATACTTTTAGAAGTGGTAGACAACATATTTCCAAGATCAGTTAACTG
genomic: CTTGGAATTTCTACACATGTAAATAATATGTTTGAGGATGTCAGAAATGGgtatgtgttc ... tgccatgtagATGGATACTTTTAGAAGTGGTAGACAACATATTTCCAAGATCAGTTAACTG
ttatcaattcactaagttcttatgtgtttgattccttttactttatgccatgtagATGGATACTTTTAGAAGTGGTAGACAACATATTTCCAAGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTCGAG
gtttgat putative branch site (score: 5)
ttccttttactttat CT-rich tract
ttttactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccactgattgggaaaaattaaatgaatgtgatatcaaaatttattttatcaattcactaagttcttatgtgtttgattccttttactttatgccatgtagATGGATACTTTTAGAAGTGGTAGACAACATATTTCCAAGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTCGAG
ccactga
- - - - - -gaaaaat
- - - - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - -caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtttg