1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttgctcggtgtagcaaaattatttcattgaaccattcatttaataaggcttatagaatcagatgtttatttacttattcatgatccaattaagagaatgcttatttcctcaatcggtcatttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTGTTGGTGTTTCAAACTATAGTG
species | Glycine max |
transcript | GLYMA08G41630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCCTGGAGTTTGGGGAAATGAAG GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTGEST: gi|10231875|gb|BE800763.1|BE800763
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: TGGCCTGGAGTTTGGGGAAATGAAG GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTGEST: gi|22524681|gb|BU083492.1|BU083492
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: TGGCCTGGAGTTTGGGGAAATGAAG GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTGEST: gi|31464900|gb|CD406928.1|CD406928
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: CTGGAGTTTGGGGAAATGAAG GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTGEST: gi|14205390|gb|BG839068.1|BG839068
genomic: CTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: TGGCCTGGAGTTT-GGGAAATGAAG GGTATATTGATGGTCTGGGAGATGCTGTTGAAAA-GGACTTGTGAAGGCTGEST: gi|9259707|gb|BE347854.1|BE347854
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: TGGCCTGGAGTTTGGGGAAATGAAG GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
cttattcatgatccaattaagagaatgcttatttcctcaatcggtcatttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTGTTGGTGTTTCAAACTATAGTG
tcatttttc CT-rich tract
aattaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctcggtgtagcaaaattatttcattgaaccattcatttaataaggcttatagaatcagatgtttatttacttattcatgatccaattaagagaatgcttatttcctcaatcggtcatttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTGTTGGTGTTTCAAACTATAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT