1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaatatgctaatgcaagacacttatgtatatgtgcaaatgatgcttgagatcaattttagtcttggaattttttgctaaataagatttataattttgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTT
species | Glycine max |
transcript | GLYMA08G41440.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATG GTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAAGAAAATTGACAAEST: gi|208123568|gb|GD924134.1|GD924134
genomic: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATGgtgagtattc ... aattttgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGA-GAAA-TTGACAA
EST: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATG GCATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACEST: gi|207720555|gb|GD703166.1|GD703166
genomic: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATGgtgagtattc ... aattttgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAAC
EST: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATG GTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACEST: gi|193456699|gb|FK423529.1|FK423529
genomic: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATGgtgagtattc ... aattttgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAAC
EST: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATG GTATCTTTGAGCGTTEST: gi|208287007|gb|GE087037.1|GE087037
genomic: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATGgtgagtattc ... aattttgcagGTATCTTTGAGCGTT
EST: CACCGAATGTGGTTCAATACTGCTGGACCTCTCACCTAAAGGCCTTCATG GTATCTTTAAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGA
genomic: CACCGAATGTGGTTCAATACTGCAGGACCTCTCACCTAAAGGCCTTCATGgtgagtattc ... aattttgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGA
tgagatcaattttagtcttggaattttttgctaaataagatttataattttgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTT
tgctaaa putative branch site (score: 2)
ttggaattttttgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatgctaatgcaagacacttatgtatatgtgcaaatgatgcttgagatcaattttagtcttggaattttttgctaaataagatttataattttgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG