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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatttgtctatcaatttgtttgacttatgttatgtaccaaaattaaagatgaattaaaatgtaaagggatttaatgtcataaacacaaaccttatttcaaatttgtcatcaaatatcatccatttagtttactcgcatttttgttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAG

Basic information

species Glycine max
transcript GLYMA08G39510.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284423|gb|AW597014.1|AW597014
EST:     AAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATACTTTCTTACATTTA
genomic: AAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|20813035|gb|BQ297513.1|BQ297513
EST:     AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|19271202|gb|BM887458.1|BM887458
EST:     AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|192305002|gb|FG997128.1|FG997128
EST:     AAGCCTCTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|192297727|gb|FG989962.1|FG989962
EST:     AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatttgtcatcaaatatcatccatttagtttactcgcatttttgttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAG
                                        tttttgtt  CT-rich tract
                        atttagttta  TA-rich tract