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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtactttaaaataataatttatcatcattgatgtgctactgtgtaatttatgatccctgtttctcatatggtttatactttttgatccttcagGCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTT

Basic information

species Glycine max
transcript GLYMA08G38190.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G38190.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0772g00020.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------gtttgtactttaaaataataa-tttatcatcattg-atgtgctactgtgtaatttatgatccctgtttctcatatggtttatactttt--tgatccttcagGCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTT
                         |  |  |  ||    |  | | |  ||  ||     ||    | |  |  |   ||  ||    | || |  ||  |     |  | |  ||||| | ||||||||| ||||| ||| ||||||||||||| || || |||||||| ||||| || || || ||| |||| |||||| 
gtttgaacatttccattcatttgaagcatacaactttcggtgttgagtccattttcgacatattcttttccattaagactac-atattagcttgttgtaaagcgggcaagtataatgatcttgcagGCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgtaatttatgatccctgtttctcatatggtttatactttttgatccttcagGCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTT
                                         ttttgat  putative branch site (score: 4)
                                       ctttttgatccttc  CT-rich tract
                                 tttatactttttgat  TA-rich tract