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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataatcactgaagagttttcttgatgttcaatagatccattaaaagtattaggtgtttgtttaagtcttctgatatgtcactgttaccccttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG

Basic information

species Glycine max
transcript GLYMA08G37270.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 5
ataatcactgaagagttttcttgatgttcaatagatccattaaaagtattaggtgtttgttt---------aagtcttctgatatgtcactgttaccccttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG
             | ||   || || |  ||||  |    | ||| | |||| | | | | |           |  |||| |  || ||        |      ||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||||||||  |  | ||||| ||||| |||||||||||  | ||||||||||||||
---------ttgtacttaaatttatctagaatacttattctcaaaattttagttttctttctccaaaaaggtggcattctaacttgacaaccaatttctacctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGG

upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 5
ataatcactgaagagttttcttgatgttcaatagatccattaaaagtattaggtgtttgtttaagtcttctgatatgtcactgttaccccttaatt--gcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG
  |  | |||  |  || ||||  | ||   |   | | ||      |  ||||  | || |      | |||||  |   |  |  |||||  ||  ||||||||||||||| || | || || || ||||||||||| || |||||||||||| |  | ||| ||||||||||||| |||||||||||||||||||||||
ccaggcgctgt-gttttctcttcttctttc-tcctttcctttttttcagcaggtaatagtgtgtcagctttgataaatgtttaatcacccttggttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG

upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 3'ss of exon 5
--ataatcactgaagagttttcttgatgttcaatagatccattaaaagtattaggtgtttgtttaagtcttctgatatgtcactgttaccccttaat-tgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG
   |  |  ||       ||  ||  |  ||  |   |   ||  |     ||   || |||   ||  ||   | ||||     | |||| ||  | |||||||||||||||| || | || || || ||||||||||| || |||||||||||| |  | ||||||||||||||||| |||||||||||||||||||||||
ctgtgttttctcttcttcttctttctttctcctttcctttttttcagcatgtaatagtgtgtc--agctttgataaatgtt-taatcaccctttgttatgcagTGAACGTGCAGTCTTTATCTGGCTCGCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAACCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724908|gb|BW669597.1|BW669597
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATT-CCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|151402224|gb|EV272037.1|EV272037
EST:     TGGACCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: TGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213597862|gb|DB958243.1|DB958243
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209711968|gb|BW679047.1|BW679047
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGT
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGT
EST: gi|209699627|gb|BW655719.1|BW655719
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213619491|gb|DB969442.1|DB969442
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTG
EST: gi|213589006|gb|DB973106.1|DB973106
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213602128|gb|DB962621.1|DB962621
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGT
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGT
EST: gi|213611858|gb|DB964806.1|DB964806
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCACTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209715301|gb|BW654188.1|BW654188
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209719837|gb|BW674989.1|BW674989
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209699197|gb|BW656186.1|BW656186
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|120529377|gb|EH257511.1|EH257511
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213588396|gb|DB967882.1|DB967882
EST:     TTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: TTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209708191|gb|BW678561.1|BW678561
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGT
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGT
EST: gi|209704314|gb|BW683546.1|BW683546
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|120530707|gb|EH258840.1|EH258840
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|120533051|gb|EH261184.1|EH261184
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209724195|gb|BW659729.1|BW659729
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213592503|gb|DB971645.1|DB971645
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209715019|gb|BW650870.1|BW650870
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209709691|gb|BW668227.1|BW668227
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|14205774|gb|BG839452.1|BG839452
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209728365|gb|BW660003.1|BW660003
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209700117|gb|BW652975.1|BW652975
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209726286|gb|BW680211.1|BW680211
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGT
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGT
EST: gi|209716859|gb|BW682261.1|BW682261
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209708166|gb|BW673829.1|BW673829
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213587729|gb|DB955591.1|DB955591
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209715940|gb|BW650957.1|BW650957
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213597651|gb|DB962561.1|DB962561
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213606611|gb|DB972532.1|DB972532
EST:     CAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAAATGGG-AG                         TGAACGTGCAGCCTCTGTCA
genomic: CAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAA-TGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCA
EST: gi|213617924|gb|DB957377.1|DB957377
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTA
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTA
EST: gi|213601602|gb|DB972366.1|DB972366
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213599231|gb|DB962282.1|DB962282
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213597587|gb|DB962553.1|DB962553
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213617635|gb|DB969347.1|DB969347
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209727410|gb|BW651932.1|BW651932
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209727383|gb|BW651931.1|BW651931
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209725631|gb|BW663120.1|BW663120
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|213587994|gb|DB957453.1|DB957453
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209708194|gb|BW678564.1|BW678564
EST:     CAAAAGCGTGCCCTAGAAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTC
genomic: CAAAAGCGTGCCCTAGAA-GCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTC
EST: gi|120533233|gb|EH261366.1|EH261366
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|209710568|gb|BW676520.1|BW676520
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
EST: gi|22539787|gb|BU089630.1|BU089630
EST:     CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG                         TGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG
genomic: CCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAGgtaaacacac ... ttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattaggtgtttgtttaagtcttctgatatgtcactgttaccccttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG
                                      ttacccctt  CT-rich tract
          tttgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataatcactgaagagttttcttgatgttcaatagatccattaaaagtattaggtgtttgtttaagtcttctgatatgtcactgttaccccttaattgcagTGAACGTGCAGCCTCTGTCAGGGTCTCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - -cactgaa
- - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacccc