Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgtgtctttgcaaccccggattgggagaaagaaaaataggaaaagggggtgtgtttttaaagttgatacttgattctggatcctcgtcttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG

Basic information

species Glycine max
transcript GLYMA08G36700.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789933|gb|BG652524.1|BG652524
EST:     AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: gi|58017014|gb|CX703756.1|CX703756
EST:     AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: gi|298194738|gb|HO043210.1|HO043210
EST:     AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: gi|57575109|gb|CX548084.1|CX548084
EST:     AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: gi|22524808|gb|BU083619.1|BU083619
EST:     AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: gi|58015077|gb|CX701819.1|CX701819
EST:     AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: gi|31311653|gb|CD396856.1|CD396856
EST:     GAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: GAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: gi|15813255|gb|BI785530.1|BI785530
EST:     AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCG                         GGTTCAAGTGCCATCTCCAGTGCTG
genomic: AGAACAAGGCTGCAGATGTGGATTCTCAAGCTACATTGTCTAAGTTTTCGgtatgcatcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggggtgtgtttttaaagttgatacttgattctggatcctcgtcttaatttcagGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG
                                           tcttaat  putative branch site (score: 3)
                                     tcctcgtctt  CT-rich tract
          tttttaaagttgata  TA-rich tract