1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caagtaaattctttttgacatcatcaaaacctacatgattcacatttgtgttcattatcaaagaatgaaaagtttatgatattatctttataccttgcagTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGATGGTAAAGCCAAGAAATGGCTT
species | Glycine max |
transcript | GLYMA08G30150.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTGTGCACCTCCCCATCTTATGGAAAATCTCATTTGCAAATTTAAGCAG TTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGATEST: gi|254319017|gb|GR830473.1|GR830473
genomic: ACTGTGCACCTCCCCATCTTATGGAAAATCTCATTTGCAAATTTAAGCAGgtaactgtta ... taccttgcagTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGAT
EST: ACTGTGCACCTCCCCATCTTATGGAAAATCTCATTTGCAAATTTAAGCAG TTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGAT
genomic: ACTGTGCACCTCCCCATCTTATGGAAAATCTCATTTGCAAATTTAAGCAGgtaactgtta ... taccttgcagTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGAT
ttgtgttcattatcaaagaatgaaaagtttatgatattatctttataccttgcagTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGATGGTAAAGCCAAGAAATGGCTT
tctttat CT-rich tract
aatgaaaagtttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtaaattctttttgacatcatcaaaacctacatgattcacatttgtgttcattatcaaagaatgaaaagtttatgatattatctttataccttgcagTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGATGGTAAAGCCAAGAAATGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - -tgacatc
- - - - - - - - - - - - caaaacc
- - - - - - - - - - - - - - - - - - -attcaca
- - - - - - - - - - - - - - - - - - - - - - - tgtgttc