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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctacttttataatctgtacctctgatgtggaatacattttaaaattttttatgaagtctgtttagtaaattgattcatgcttaaatgccaacttgtgctgcattggcgtcttcaattattttgtttatcgacttcatcttattttttggtatgatttggtcatcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG

Basic information

species Glycine max
transcript GLYMA08G28600.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28600.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 4
gtaagctacttttataatctgtacctctgatgtggaatacattttaaaattttttatgaagtctgtttagtaaattgattcatgcttaaatgccaacttgtgctgcattggcgtcttcaattattttgtttatcgacttcatcttattttttggtatgatttggtcatcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG
                                                            |  ||| ||  |  |  ||  ||  | | | |   | || ||     ||||   |    |  |||||| || || |      | | | |   | |    |||  | | |||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| || ||||| ||||||||||||||
------------------------------------------------------------gaatgtctaacatgtccatatatcataacaag---atttctg----gttggtagc----aaaattttgcttctccaaaggcacatttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattattttgtttatcgacttcatcttattttttggtatgatttggtcatcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG
                     ttcatcttatttttt  TA-rich tract