1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catggtgatcaataatctggattgctcgtttgatctgtcaaattggactccagttgaaattaattatcctttgtttttcaacctatacttttttctgcagTTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGCATGGATGGCTTACCTG
species | Glycine max |
transcript | GLYMA08G27080.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAG TTCCAAAATGATTTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTTEST: gi|13252202|gb|BG363105.1|BG363105
genomic: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAGgcatgtttta ... ttttctgcagTTCCAAAATGATT-GATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCT-
EST: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAG TTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGCEST: gi|15663161|gb|BI700532.1|BI700532
genomic: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAGgcatgtttta ... ttttctgcagTTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGC
EST: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAG TTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGCEST: gi|213613815|gb|DB961312.1|DB961312
genomic: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAGgcatgtttta ... ttttctgcagTTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGC
EST: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAG TTCCAAAATGATAGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGC
genomic: GCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCATTTCTAGgcatgtttta ... ttttctgcagTTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGC
gactccagttgaaattaattatcctttgtttttcaacctatacttttttctgcagTTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGCATGGATGGCTTACCTG
aattaat putative branch site (score: 3)
cctatacttttttct putative PPT
aaattaattatccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggtgatcaataatctggattgctcgtttgatctgtcaaattggactccagttgaaattaattatcctttgtttttcaacctatacttttttctgcagTTCCAAAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGCATGGATGGCTTACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
catggtg
- - - - - - - - - - - - - - - - -tctgtca
- - - - - - - - - - - - - - - - - - - - - - - -ctccagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaattaa