1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtagtaatagatcttttttgaaaatcagataatccaaattggatttattcgtcaaatgatgttatcatcaaagagattttttcccatgtttttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTG
species | Glycine max |
transcript | GLYMA08G26180.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAG GGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTGEST: gi|208210675|gb|GE011736.1|GE011736
genomic: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTG
EST: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAG GGCGGTATTTACACTCTTCCCAGTCATCTATACTACCCAATGCTAGAGATTEST: gi|209726300|gb|BW659613.1|BW659613
genomic: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTAT-CT-CCCAATGCTAGAGATT
EST: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAA-TAAAG GGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTEST: gi|17519479|gb|BM188521.1|BM188521
genomic: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCT
EST: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAG GGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTGEST: gi|193495997|gb|FK461937.1|FK461937
genomic: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTG
EST: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAG GGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAG
genomic: CTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAG
tattcgtcaaatgatgttatcatcaaagagattttttcccatgtttttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTG
ttttttcccatgtttt CT-rich tract
agatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaatagatcttttttgaaaatcagataatccaaattggatttattcgtcaaatgatgttatcatcaaagagattttttcccatgtttttcatgtagGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - -gaaaatc
- - - - - - - - - - - - - - - -atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt