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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcttaactttttgattcattaattttcatgttatttggagacttgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT

Basic information

species Glycine max
transcript GLYMA08G24000.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 5
----------------ttgcttaactttttgattcattaattttcatgttatttggagacttgcctaaccattat--tatatatgaatattattat-------ggaacacttgtcttctt-------cccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
                |  | | | || ||   | || | |       ||||| |    |   |  ||| ||  |  || ||||| |   | || |       ||   | |||| |  ||         |||||||||||| ||||| ||||| |||||||| ||||| |||   |||||||||||| ||||||| ||||||| |||||| ||||| ||||| || ||||| 
gtaaactgagcaaaaataccctgagttcttctattat-agtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCTGCTAGGATGGAGTCTGGAACTGGCAACGGTGACAGTGAAGTCCAGCGA

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 5
----ttgcttaactttttgattcattaattttcatgttatttggagact-tgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
       ||||     ||||  ||| | ||| ||    ||    |  || |   || |  | ||| |      |  || || |       |    |  | |  ||||||||||| ||||| ||||| || ||||| |||||||||  ||| ||||||||| | ||||| ||||||| |||||| ||||||||||| || ||||||
acaaggccttagtgagttgaagcataactttgcac---atgcacaatctgttattatctttcattgtgggcttagtttgttttatctggttcacttattgc--agGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATCTGCTAGAATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGT

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G107362_T04 (Zea mays), 3'ss of exon 5
-ttgcttaacttt---ttgattcattaattttcatgt---tatttggagacttgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
 ||  ||   | |   ||||  ||| | ||| ||| |   ||||  |  | | || |   |||| |    |  |  | ||||   ||  ||||| |        |||||||||||| ||||| ||||| || ||||| |||||||||  ||| ||||||||| | ||||| ||||||| |||||| ||||| ||||| || ||||||
attagttgtttgtgagttgaagcataattttgcatattcatattctgttattagctttttcattgtgggcttagtttgttatcg-ggttcacttattg------cagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATCTGCTAGAATGGAGTCTGGAACTGGCAACGGTGACAGTGAAGTTCAGCGT

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 3'ss of exon 5
ttgcttaactttttgattcattaattttcatgttatttggagacttgcctaaccattattatatatgaat-attattatggaacacttgtcttct---tcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
 |  | | |    | || ||  | |  |||| ||  |||      ||   ||   |||||  |  |   | |   || | | ||   || ||| |   |  |||||| ||||| |||||||| ||||||||||| ||||| || ||||| || |||||||| ||||||||||| ||||| |||||||| |||||||| ||  | 
gtaatgagcaaagt-atacaccattaatcatcttcattgtg---ctgaaaaatacttattccagctagcttacctttctagtacctctggcttatggttttcagGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATGGAATCTGGTAGTGGAAATGGTGACAGTGAGGTGCAAAGG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 5
ttgcttaactttttgattcat-taattttcatgttatttggagacttgcctaaccattattatatatgaatattattatggaacacttgtcttc--ttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
   |  |       |  |||| |||    ||  |||     ||    |   |  | ||   |    |   |    ||     ||||  || |    ||  |||||| ||||| |||||||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||| |||||||| |||||||| || || 
---cacagtgccaagtctcatgtaaggagcaaattacaaataggtgagatgattcgttgaaaatactctttccagttggcttacaccggtttatggttttcagGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATGGAATCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 5
---ttgcttaactttttgattcattaattttcatgttatttggagacttgcctaaccattattatatatgaatatta-ttatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
     ||  | | |    | | |  ||     |    |    |   ||| | |      | || | | | ||  ||| || | ||||   | ||||  |  |||||| ||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||| 
gtagagcccatcatcaacaataacaaaaaggaaaaaaaaaatgttgctttctttgttgctgtt-tgtttaaactttactttttgaac---tatctttcttacagGGAGCATGCACCATCAATAATCTTTATGGATGAGATTGACAGTATTGGATCTGCTCGTATGGAATCAGGAAGTGGCAATGGTGATAGTGAAGTCCAGCGG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------------------------------------------ttgcttaacttttt-gattcat-taattttcatgttatttggagacttgcct--aaccattattatatatgaatattattatggaacacttgt--cttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
                                                                                               ||  ||| | ||| || |||  |  ||||| ||   | | ||   |||  |  || |    || ||| |     ||||  |        ||   |||  |  |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| || ||||| 
gtttgtttaatatctttagtggaaaccatgacttgtgatacacctagaggatttatttttcactcataagataatattttatatgttacctctcctgggtaattgtttagagtcacatttttttcctgggttattgaattttgttttaaatctcccttttatcttgtccttatggtctcttctctgctgctttattacagGGAGCATGCTCCATCAATCATCTTCATGGATGAAATTGACAGTATTGGATCTGCTCGAATGGAATCTGGAACTGGAAATGGTGATAGTGAAGTGCAGCGA

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S245_17V6.1 (Physcomitrella patens), 3'ss of exon 5
ttgcttaactttttgatt--cattaat----tttcatgttatttggagacttgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
|    |   |||||||||  ||| ||      ||     ||  |||| ||||  |    ||  |   |||| || | |||  | |  |   |||| |  ||   ||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||  |||| ||||| | ||||||||| |||||||| || ||||| 
taagatgtgtttttgattgccatcaacggaacttgtctctacctggaaactt--catgtcaagaacgtataaga-tgttaacaagttatttttgtatggtt---agGGAACATGCACCATCAATCATCTTCATGGATGAAATTGATAGTATTGGATCAGCTCGTGTGGAGTCTGGGAATGGCAATGGAGATAGTGAAGTTCAGCGG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ04162 (Selaginella moellendorffii), 3'ss of exon 4
ttgcttaactttttgattcattaattttcatgttatttggagacttgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
                                         |  | |      |  |||| |||   | |||  ||| |       ||| || |||  || || ||||||||||| |||||||| |||||||| |||||||| ||||| ||  | || ||||| ||||| | |||||| || || ||||| || ||| | 
-----------------------------------------gtatcgtaatgtccatattctatcctagtatagttacgtt-tttctgtgtt-ttcttagAGAGCATGCTCCATCCATTATCTTTATGGACGAGATTGACAGCATTGGCTCGTCCCGTATGGAGTCTGGCAATGGCAACGGGGACAGTGAAGTGCAGAGA

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ28638 (Selaginella moellendorffii), 3'ss of exon 5
ttgcttaactttttgattcattaattttcatgttatttggagacttgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
                                         |  | |    | |  |||| |||   | |||  ||| |       ||| || |||  || || ||||||||||| |||||||| |||||||| |||||||| ||||| ||  | || ||||| ||||| | |||||| || || ||||| || ||| | 
-----------------------------------------gtatcgtaatatccatattctatcctagtatagttacgtt-tttctgtgtt-ttcttagAGAGCATGCTCCATCCATTATCTTTATGGACGAGATTGACAGCATTGGCTCGTCCCGTATGGAGTCTGGCAATGGCAACGGGGACAGTGAAGTGCAGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193665729|gb|FK609644.1|FK609644
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|151400412|gb|EV270226.1|EV270226
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|193604433|gb|FK560322.1|FK560322
EST:     GGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: GGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|9819982|gb|BE555495.1|BE555495
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|193732629|gb|FK668487.1|FK668487
EST:     GGAGAAGGTTCTAGAATGGTCAGGGAAC-TTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: GGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|207778659|gb|GD750636.1|GD750636
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGATGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|15589667|gb|BI674283.1|BI674283
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|193468362|gb|FK434483.1|FK434483
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGATGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|120533815|gb|EH261948.1|EH261948
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAAATATCTTCATGGACGAAATTGACAGTA
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTA
EST: gi|13562459|gb|BG550679.1|BG550679
EST:     TACATTGGAGAAGGTTCTATAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|254333837|gb|GR848755.1|GR848755
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|15661720|gb|BI699091.1|BI699091
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|192298661|gb|FG990957.1|FG990957
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|15589675|gb|BI674291.1|BI674291
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|207807655|gb|GD776674.1|GD776674
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGATGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|16281214|gb|BI944372.1|BI944372
EST:     ACATTGGAGAAGGTTCTACAATGGTCAGGGAACCTTTTTGT-ATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGTATC
genomic: ACATTGGAGAAGGTTCTAGAATGGTCAGGGAAC-TTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|21638891|gb|BM139937.1|BM139937
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGAT
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCA-Ggtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGAT
EST: gi|254325633|gb|GR838514.1|GR838514
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|193618975|gb|FK568367.1|FK568367
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|16280447|gb|BI943967.1|BI943967
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         NGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|151412070|gb|EV281882.1|EV281882
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|193373813|gb|FK338905.1|FK338905
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|16284142|gb|BI945928.1|BI945928
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|16996050|gb|BM085422.1|BM085422
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|193338668|gb|FK302153.1|FK302153
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|18690675|gb|BM519523.1|BM519523
EST:     TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
EST: gi|208134117|gb|GD931336.1|GD931336
EST:     AACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG                         GGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC
genomic: -ACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctc ... ttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT
 gcctaac  putative branch site (score: 2)
                                     cacttgtcttcttccc  putative PPT
         attattatatatgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgcttaactttttgattcattaattttcatgttatttggagacttgcctaaccattattatatatgaatattattatggaacacttgtcttcttcccagGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgt