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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgattcaataatctcttgttttttactggataaatttgatcagtatatacgaatgaatgctaactttctttctttgttatcaattattctaaattctattttctgcttgcagGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCC

Basic information

species Glycine max
transcript GLYMA08G23320.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 4
-----gtacttgattc-aataatctcttgttttttactggataaatttgatcagt------atatacgaatgaatgctaactttctt------tctttgttatcaattattctaaattctattttctgcttgcagGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCC
      | ||  || | || |  |||||  ||||  ||| | |||| |  | |||      ||  | |||| |||| ||| ||||||      ||||||| ||  || | || |   | | ||||||| | | ||||| |||| |||||||||||||||||||||| || ||   ||| || ||||||||  | |||||  |||||||||| || ||||| || ||||| |||||
gtttaatcctaaatccgaacacactctttcttttacctgaaaaaatgttgttagtctttgtattcatgaatcaatggtaattttcttatagtatctttgt-attcatcaatcaatggtat-ttttctgatcgtagGAAAGCACTTAGCAGAGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATGGGTAGTTGCTGAAATCGCTGTAGTAGCTTGTGATATTCC

upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 5
gtacttgattcaataatctcttgttttttactggataaatttgatcagtatatacgaatgaatgctaactttctttctttgttatcaattattctaaattctattttctgcttgcagGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCC
                            ||   |||   |||   |||    |   | |||||      | ||    ||| ||     | ||    ||   | |||  |  ||| ||||| |||  |||||||||| || |||  ||||||| |   |||||||||||| ||||| |||||  ||||||||||||| ||||| || |||||||||||
---------------------------gtatgtgatttctttatccagctattttcattgaatatc--ttctcccaatttattgatcctcatctccaacgttgtttcttaattgtagGAAAGCATTTAGCAGAGCACTGCAGAATTGAATATCCAAAGGTGCCTAACTTCATCCTATGGGTTCTTGCTGAAATTGCTGTAGTTGCATGTGACATTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaactttctttctttgttatcaattattctaaattctattttctgcttgcagGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCC
                                    ttctattttctgctt  CT-rich tract
           tttctttgttatcaat  TA-rich tract