Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatggtcttaggttttccattgaagatactcttttgacaatttgcttaaattatattctattaacaaataattgcttttattttaaaaaataaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGA

Basic information

species Glycine max
transcript GLYMA08G22910.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22910.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 4
----------tatggtcttaggttttccattgaagatactcttttgacaatttgcttaaattatattctattaacaaataattgcttttattttaaaaaataaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGA
           ||   | | |  |  |  |    ||| | |||   ||||||   | | ||| || |   |||| | | ||||| |||| |     || | |   | |||| | |||||||| |||||||| || || |||||| |||||||||| || ||||||||||||||||| || ||  ||||||||||||||||||||||||| 
tactactcttcatcagcgtggagtaacttt----gattcacttcatacaattcagtcacatt-tagtgggttaaaagagaattgattttct-----aatacatgctgcagCTTGAATTGGCAACATCAACTCTGTAAAAATCCAAGGCCAAATCCAGATATAAAAACTCTTTTTGTAGACCATACATGTGGACAACCAAATGGTGCACGG

upper sequence: GLYMA08G22910.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ36405 (Selaginella moellendorffii), 3'ss of exon 8
tatggtcttaggttttccattgaagatactcttttgacaatttgcttaaattatattctattaacaaataattgcttttattttaaaaaataaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGA
                          | |     ||    |     ||  || | | ||  ||  | | |     || | ||||      |   |  |||||| |||||||| ||||| ||||||||||||||  |||| || || || || |||||||| ||||| |||||  | ||| |    || ||||| || || 
-------------------------gtgcgtccctgcttttccagctac-ttctgtgctgatagaagaaatacatttctttttttct---tttttcccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTAGCGCGCCGAATGGAGCCCGC

upper sequence: GLYMA08G22910.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ32018 (Selaginella moellendorffii), 3'ss of exon 4
tatggtcttaggttttccattgaagatactcttttgacaatttgcttaaattatattctattaacaaataattgcttttattttaaaaaataaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGA
                     |    |||    ||  | |  | |     || | | ||  ||  | | |     || | ||||      |   |  |||||| |||||||| ||||| ||||||||||||||  |||| || || || || |||||||| ||||| |||||  | |||||    || ||||| || || 
---------------------gtgcgtacctgcttttccagctac-----ttctgtgctgatagaagaaatgcatttctttttttctttttttgtc-cagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC

upper sequence: GLYMA08G22910.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ37833 (Selaginella moellendorffii), 3'ss of exon 4
tatggtcttaggttttccattgaagatactcttttgacaatttgcttaaattatattctattaacaaataattgcttttattttaaaaaataaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGA
                     |    |||    ||  | |  | |||    | |  |     || ||||   |   ||| |||     | |   || |||||| |||||||| ||||| ||||||||||||||  |||| || || || || |||||||| ||||| |||||  | |||||    || ||||| || || 
---------------------gtgcgtacctgcttttccagctactt---ctgtgctgatagaagaaatgcatttctttgttt-----atttttttccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC

upper sequence: GLYMA08G22910.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ35798 (Selaginella moellendorffii), 3'ss of exon 4
tatggtcttaggttttccattgaagatactcttttgacaatttgcttaaattatattctattaacaaataattgcttttattttaaaaaataaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGA
                          | |     ||    |     ||  || | | ||  ||   || || | | |||  |||      |   |  |||||| |||||||| ||||| ||||||||||||||  |||| || || || || |||||||| ||||| |||||  | |||||    || ||||| || || 
-------------------------gtgcgtccctgcttttccagctac-ttctgtgctgata--gaagaaatacatttcgtttttttcttttttcccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322661|gb|GR838075.1|GR838075
EST:     CAATTTCCCA-CCTTAAAA-CTCAAGGTTACGGACTCTCATCAATCAAAG                         CCTAAATTGGCAGCATCAACTT
genomic: CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaatttttc ... taaattacagCCTAAATTGGCAGCATCAACTT
EST: gi|9204484|gb|BE330708.1|BE330708
EST:     CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAG                         CCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT
genomic: CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaatttttc ... taaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT
EST: gi|5605887|gb|AI899985.1|AI899985
EST:     CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAG                         CCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT
genomic: CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaatttttc ... taaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaattatattctattaacaaataattgcttttattttaaaaaataaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGA
             tattaac  putative branch site (score: 1)
             tattaacaaataattg  TA-rich tract