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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgcactttttcaagagattactataagctgatggcaatcaattaaaatgtgtgatgaatcattgttatatttattagtatttcttattttcttgaacagGGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGTATTCCTATATTTAAAGATTT

Basic information

species Glycine max
transcript GLYMA08G22890.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6964108|gb|AW432801.1|AW432801
EST:     GGGATTAGAAATGTTACACACATAGAGAAAGTACTCAGTGAAGCTCATAG                         GGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
genomic: GGGATTAGAAATGTTACACACATAGAGAAAGTACTCAGTGAAGCTCATAGgtatttgcac ... tcttgaacagGGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
EST: gi|207708501|gb|GD691835.1|GD691835
EST:     GGGATTAGAAATGTTACACACATAGAGAAAGTACTCAGTGAAGCTCATAG                         GGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
genomic: GGGATTAGAAATGTTACACACATAGAGAAAGTACTCAGTGAAGCTCATAGgtatttgcac ... tcttgaacagGGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
EST: gi|7458587|gb|AW666037.1|AW666037
EST:     GGGATTAGAAATGTTACACACATAGAGAAAGTACTCAGTGAAGCTCATAG                         GGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
genomic: GGGATTAGAAATGTTACACACATAGAGAAAGTACTCAGTGAAGCTCATAGgtatttgcac ... tcttgaacagGGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgtgtgatgaatcattgttatatttattagtatttcttattttcttgaacagGGTATTGAAACCAGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGTATTCCTATATTTAAAGATTT
                                 tatttcttattttctt  CT-rich tract
         atgaatcattgttata  TA-rich tract