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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttggtactcttgtttcttaatatattttgttcacaaaatgattcagtgtttttcttgctaacgtctcttttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCATATAGACTACAATTTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGA

Basic information

species Glycine max
transcript GLYMA08G22740.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984428|gb|BE658536.1|BE658536
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
EST: gi|192314804|gb|FK006016.1|FK006016
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
EST: gi|209725498|gb|BW677795.1|BW677795
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
EST: gi|17519754|gb|BM188796.1|BM188796
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
EST: gi|20448322|gb|BQ252446.1|BQ252446
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CTTTGAACTTGATCTTTTCATTTACAAATGGAG
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAG
EST: gi|151400172|gb|EV269986.1|EV269986
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CCTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
EST: gi|213596677|gb|DB977993.1|DB977993
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT
EST: gi|213608233|gb|DB970830.1|DB970830
EST:     CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATG                         CTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGG-CCAT
genomic: CAAAGCTGATGCCCCAATATATTCCATTCAGATATGCATTCCTAAGCATGgtaatttggt ... ttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttcacaaaatgattcagtgtttttcttgctaacgtctcttttttgtgcagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCATATAGACTACAATTTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGA
                               tgctaac  putative branch site (score: 1)
                                     cgtctcttttttgt  CT-rich tract
          aaaatgatt  TA-rich tract