Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaataaaattcttttcaactatttagaacaatagtaatcaaatgactgtttacacattgatgctaattattctatcctcttttttttttacaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATCACCATTGATTGCAATCCTTCAATTAAATCTGGAATAAATTCTGGAAAG

Basic information

species Glycine max
transcript GLYMA08G22410.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190828|gb|HO032949.1|HO032949
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192302311|gb|FG996649.1|FG996649
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|298175877|gb|HO015282.1|HO015282
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192330664|gb|FK021969.1|FK021969
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|298163725|gb|HO012458.1|HO012458
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGAATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192297284|gb|FG992393.1|FG992393
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|17518872|gb|BM187914.1|BM187914
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCG
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCG
EST: gi|192325877|gb|FK016554.1|FK016554
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|193648660|gb|FK600627.1|FK600627
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCATAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGA
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGA
EST: gi|31462980|gb|CD405008.1|CD405008
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|298179041|gb|HO024776.1|HO024776
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|15813798|gb|BI786073.1|BI786073
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|16348392|gb|BI973987.1|BI973987
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|193708684|gb|FK648534.1|FK648534
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|209715584|gb|BW674321.1|BW674321
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGTGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192330663|gb|FK021968.1|FK021968
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|298198446|gb|HO039985.1|HO039985
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|193634000|gb|FK581108.1|FK581108
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|38192769|gb|CF921975.1|CF921975
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192297285|gb|FG992394.1|FG992394
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192310382|gb|FK002262.1|FK002262
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|208172653|gb|GD972882.1|GD972882
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGCGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|193411396|gb|FK377187.1|FK377187
EST:     CCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: CCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192302312|gb|FG996650.1|FG996650
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|207802763|gb|GD773976.1|GD773976
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAATGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGA
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGA
EST: gi|193366243|gb|FK330230.1|FK330230
EST:     CCACGAATGTCCAGTGTGCGCACAGTTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGA
genomic: CCACGAATGTCCAGTGTGCGCACAG-TATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGA
EST: gi|209715583|gb|BW674320.1|BW674320
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGTGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|192324441|gb|FK015792.1|FK015792
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: gi|298185232|gb|HO030445.1|HO030445
EST:     TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT                         CTTGAAGTGGT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtttacacattgatgctaattattctatcctcttttttttttacaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATCACCATTGATTGCAATCCTTCAATTAAATCTGGAATAAATTCTGGAAAG
                tgctaat  putative branch site (score: 2)
                      ttattctatcctcttt  CT-rich tract
                   taattattctatcctc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaataaaattcttttcaactatttagaacaatagtaatcaaatgactgtttacacattgatgctaattattctatcctcttttttttttacaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATCACCATTGATTGCAATCCTTCAATTAAATCTGGAATAAATTCTGGAAAG

- aataaaa
- - - - - - - - - - - - - - - - - - - - - atgactg