Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtggacgttttttagtctatttcattgatcgtatatctgcctcttgattcatttgcttgatgtcattttctttctttatatatttcatggggtctcatatgcagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA

Basic information

species Glycine max
transcript GLYMA08G22140.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G124886_T04 (Zea mays), 3'ss of exon 5
gtgggtggacgttttttagtctatttcattgatcgtatatctgcctcttgattcatttgcttgatgtcattttctttctttatatatttcatggggtctcatatgcagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
                                  ||||     ||      |   | |||||  ||||  |    ||       || ||||||    || |||| ||  |  | ||| ||||| | || || || ||||||||||| || || ||||||||||| || || ||||||||||| || ||||| || || || ||||||||||| || || ||
----------------------------------gtatgctcacccaactttctgtgtgcttcttgtccgtgaggtt-------tacttcatg----ctaatattcaataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGATGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G141587_T01 (Zea mays), 3'ss of exon 5
gtgggtggacgttttttagtctatttcattgatcgtatatctgcctcttgattcatttgcttgatgtcattttctttctttatatatttcatggggtctcatatgcagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
                                       | |||      | |  | |||||| |     | |||| | |||  | || |||   | || |||| |   |  | ||| ||||| | || || || ||||||||||| || || ||||||||||| || || || |||||||| || ||||| || || || ||||||||||| || || ||
--------------------------------------gtatgcacaaccaattttctgcttgct-----tctcttcccttaggt-ttacatcatg-ctgatattccataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGACGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgggtggacgttttttagtctatttcattgatcgtata--tctgcctcttgattcatttgcttgatgtcattttctttctttatatatttcatggggtctcatatgcagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
||    || | ||| ||  | | | || ||  |  |||   ||    | ||| |  || | ||   |     | |||   ||  ||  | |  ||   | | ||||     |||| ||||||||| |||||||||||||| | ||||| || || |||||||| ||||| || |||||||||| ||| |||||||| ||||||||||| ||||| || |||||
gtatacgg-cttttgttcttttgtgtcttttgttatattgttcaagtttttgttgtatgtactaagtactcgtgtctagtttgttacttattctgcttttttatat----tatgactttgcagTTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTGATGATATGTATATCCGTGTATACAATTACAACACCATGGACAAGGTTAA

upper sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 5
gtgggtggacgttttttagtctatttcattgatcgtatatctgcctcttgattcatttgcttgatgtcattttctttc-tttatatatttcatggggtctcatatgcagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
  |  |      ||| |   |   |||  ||||   ||   |     ||  |||| |||||  || |    || | |  | | |   | | |  |    | ||||     |||| |||||||||||||| |||||||||||| | ||||| || |||||||| || || || ||||||||||  || |||||||| |||||||| |||||||| || || ||
--gtataacaagtttatgagcatcttc--tgatttcattgttatagattt-ttcacttgctgtatattgccttgtatagtctgtcgctgttactgaaatttatat-----atgactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGGATGATATGTACATCCGTGTATACAATTACAATACAATGGACAAGGTCAA

upper sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgggtggacgttttttagtctatttcattgatcgtatatctgcctcttgattcatttgcttgatgtcattttctttctttatatatttcatggggtctcatatgcagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
                                  ||||   |   |      ||||| | |   | | ||| | |  |   | ||  ||  | |  ||||   ||        || ||||||| ||||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||||||||||| || || |||||||| ||||||||  | ||
----------------------------------gtatga-tatatagcatctcatt-gttccttcttattctttcgc---acatcatttgttgaatctc---tgtcctggtgttgtgcagTTCGGTCAGCAAAGTTCATTGCACGGAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACACTATGGATAAGATCAA

upper sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
gtgggtggacgttttttagtctatttcat-tgatc------gtatatctg---cctcttgattcattt--gcttgatgtcattttctttctttatat-atttcatggggtctcatatgcagcatgatt-ttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
||  ||  | ||  ||||     || ||| || ||      || |   ||    | |||||| |||||   ||  || ||  | |  ||  | |  | ||| ||||   | ||| ||    ||| ||  |||||||||||||||| |||||||| |||||||| || ||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||| |||||
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatg---tttca-attttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttctttctttatatatttcatggggtctcatatgcagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
     ttctttctttatatat  TA-rich tract