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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgtttctccctcatatttttataccctcctgcaagctattgatctgtgttggtgatagagcatgcagttaaagtgtcaccaattttaatgttaatttctctcatataacattctttagttttattttccttcttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT

Basic information

species Glycine max
transcript GLYMA08G21770.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12496204|gb|BG046947.1|BG046947
EST:     TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAA                         GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
genomic: TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGgtgatgtttc ... ttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
EST: gi|14991661|gb|BI317334.1|BI317334
EST:     TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAG                         GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
genomic: TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGgtgatgtttc ... ttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
EST: gi|208061416|gb|GD860110.1|GD860110
EST:     TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAG                         GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
genomic: TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGgtgatgtttc ... ttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttaatttctctcatataacattctttagttttattttccttcttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT
               atataac  putative branch site (score: 3)
                       ttctttagttttattt  CT-rich tract
             tcatataacattcttt  TA-rich tract