1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgtgtataagtttacatacatatttgcattttcttgtatctcattctcttcatgtatccccttctaagaaatattattatttaccttctatgatatgttgcaagggcagGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAGAAAGATGCTATTGTTTTGACTGTTTTACAG
species | Glycine max |
transcript | GLYMA08G21380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGG GGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAGEST: gi|7925880|gb|AW831906.1|AW831906
genomic: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGGgtgtgtataa ... gcaagggcagGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAG
EST: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGG GGTACACATGTTGCTATTGCTTTTGAAEST: gi|254320746|gb|GR827195.1|GR827195
genomic: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGGgtgtgtataa ... gcaagggcagGGTACACATGTTGCTATTGCTTTTGAA
EST: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGG GGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAGEST: gi|13562687|gb|BG550907.1|BG550907
genomic: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGGgtgtgtataa ... gcaagggcagGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAG
EST: TTTTCGTCGTCATGGTGAAGGG GGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAGEST: gi|8282640|gb|BE020201.1|BE020201
genomic: TTTTCGTCGTCATGGTGAAGGGgtgtgtataa ... gcaagggcagGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAG
EST: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGG GGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAG
genomic: AACCAAAGTCTGTCTATGTCGGGGGTGATTTTCGTCGTCATGGTGAAGGGgtgtgtataa ... gcaagggcagGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAG
tatccccttctaagaaatattattatttaccttctatgatatgttgcaagggcagGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAGAAAGATGCTATTGTTTTGACTGTTTTACAG
aaatattattatttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtataagtttacatacatatttgcattttcttgtatctcattctcttcatgtatccccttctaagaaatattattatttaccttctatgatatgttgcaagggcagGGTACACATGTTGCTATTGCTTTTGAAGTGCCTGGTGGCTGGCAAAAGGAGAAAGATGCTATTGTTTTGACTGTTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG