1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtctgtatttctgtacaaattctatcagatatttctgtctagttaagtttctagatgctaaataaatgtgtttgttttcccatgttccagAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAGATAG
species | Glycine max |
transcript | GLYMA08G20540.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTAAATCAGCGAAG AGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAEST: gi|14991092|gb|BI316765.1|BI316765
genomic: GCTAAATCAGCGAAGgtctgtattt ... catgttccagAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGA
EST: GGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAG AGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAEST: gi|209724374|gb|BW662933.1|BW662933
genomic: GGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGgtctgtattt ... catgttccagAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGA
EST: GGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAG AGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGA
genomic: GGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGgtctgtattt ... catgttccagAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGA
tgtctagttaagtttctagatgctaaataaatgtgtttgttttcccatgttccagAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAGATAG
tgctaaa putative branch site (score: 2)
ttttcccatgttcc putative PPT
taaataaatgtgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatttctgtacaaattctatcagatatttctgtctagttaagtttctagatgctaaataaatgtgtttgttttcccatgttccagAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT