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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttttaagcaattttaacttttttgatggattaaattatagaataacaatgtcatgttacttgatcttcaatctgaccgtaagtttctgatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACATTGAAAACGAGCTACCTATTGTTGAATA

Basic information

species Glycine max
transcript GLYMA08G20370.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425282|gb|CA936802.1|CA936802
EST:     GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|31560978|gb|CD486816.1|CD486816
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|21256834|gb|BQ453722.1|BQ453722
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGC
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGC
EST: gi|19937410|gb|BQ081279.1|BQ081279
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|192330008|gb|FK020824.1|FK020824
EST:     ATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: ATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|31470945|gb|CD412973.1|CD412973
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|8404161|gb|BE059795.1|BE059795
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|31305637|gb|CD390840.1|CD390840
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|7029699|gb|AW459482.1|AW459482
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|27425296|gb|CA936816.1|CA936816
EST:     GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|151410805|gb|EV280620.1|EV280620
EST:     AAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTTGACAAGAACCCT
genomic: AAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTT-GTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTT-GACAAGAACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaatgtcatgttacttgatcttcaatctgaccgtaagtttctgatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACATTGAAAACGAGCTACCTATTGTTGAATA
                                    taagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatttttaagcaattttaacttttttgatggattaaattatagaataacaatgtcatgttacttgatcttcaatctgaccgtaagtttctgatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACATTGAAAACGAGCTACCTATTGTTGAATA

- - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - caatgtc