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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttttaagcaattttaacttttttgatggattaaattatagaataacaatgtcatgttacttgatcttcaatctgaccgtaagtttctgatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACATTGAAAACGAGCTACCTATTGTTGAATA

Basic information

species Glycine max
transcript GLYMA08G20370.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256834|gb|BQ453722.1|BQ453722
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGC
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGC
EST: gi|27425282|gb|CA936802.1|CA936802
EST:     GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|151407511|gb|EV277326.1|EV277326
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|19937410|gb|BQ081279.1|BQ081279
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|192330008|gb|FK020824.1|FK020824
EST:     ATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: ATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|192330007|gb|FK020823.1|FK020823
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|15814159|gb|BI786434.1|BI786434
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGA
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGA
EST: gi|151400839|gb|EV270653.1|EV270653
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|15814245|gb|BI786520.1|BI786520
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|151410805|gb|EV280620.1|EV280620
EST:     AAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTTGACAAGAACCCT
genomic: AAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTT-GTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTT-GACAAGAACCCT
EST: gi|31470945|gb|CD412973.1|CD412973
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|8404161|gb|BE059795.1|BE059795
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|31305637|gb|CD390840.1|CD390840
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|22523391|gb|BU082202.1|BU082202
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|31560978|gb|CD486816.1|CD486816
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|192294008|gb|FG987177.1|FG987177
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|7029699|gb|AW459482.1|AW459482
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|27425296|gb|CA936816.1|CA936816
EST:     GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
genomic: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: gi|13252293|gb|BG363196.1|BG363196
EST:     AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG                         ACACTAACTCAAGCTTGGGCTACAG
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaatgtcatgttacttgatcttcaatctgaccgtaagtttctgatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACATTGAAAACGAGCTACCTATTGTTGAATA
                                    taagttt  TA-rich tract