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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcttttatttatattctcatgctgacacataacaatgctctttggatttatctcgtgtttatgaattaatctttttgataacacttagtttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTCTGTAGCACACTTACTGTTTCACAGGCCCTCAGATCCATCGGTGTTGCTT

Basic information

species Glycine max
transcript GLYMA08G19150.4
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19150.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G64170.2 (Arabidopsis thaliana), 3'ss of exon 6
-----attcttttatttatattctcatgctgacacataacaatgctctttggatttatctcgtgtttatgaattaatctttttgata-acacttagtttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTCTGTAGCACACTTACTGTTTCACAGGCCCTCAGATCCATCGGTGTTGCTT
     | ||| || |||| |  ||    ||    |      |  |    |  |||| |||    ||       ||||||||   ||    |  | || |||| ||||| ||| ||||| |||||||| |||||||| |||||||| || ||||| ||  |||| || || ||||||||||||||||||||  ||||  | |     
tagtaactctcttctttagaaacttccacttgggctcttgtactcgtccttcatttctcttagattc------taatctttgatatctgtatgtggtctcatccagGTATGCTGGATTCATGGATATCGAAACTGATACAAACCCGATAGATCGATCGATAGCTCATTTGCTGTTTCACAGGCCCTCAGACTCATCTCTTTCATCC

upper sequence: GLYMA08G19150.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0178g00040.t01 (Vitis vinifera), 3'ss of exon 6
attcttttatttatattctcatgctga---cacataacaatgctctttggatttatctcgtgtttatgaattaatctttttgataacacttagtttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTCTGTAGCACACTTACTGTTTCACAGGCCCTCAGATCCATCGGTGTTGCTT
 || | || ||| |  ||   |    |   ||  |  | |   | |||   ||| | |  |||  |||| || |  ||||| ||     ||   || |||||||||  | ||||| ||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||| |||| ||||| |||||  |  |||  
-ttttattttttttggtcgagtatgaagttcagttttctacagttttttttttttttttttgtaaatgatttga--tttttcattttctttttattgattcagGTGCACTGGATTTATGGATATGGAAACTGATACAAATCCAATTGATCGGTCTATAGCACACTTACTGTTTCACCGGCCTTCAGACCCATCTATAGTGCCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttatctcgtgtttatgaattaatctttttgataacacttagtttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTCTGTAGCACACTTACTGTTTCACAGGCCCTCAGATCCATCGGTGTTGCTT
                                tgataac  putative branch site (score: 2)
                                             tttcattc  putative PPT
              tttatgaattaatctt  TA-rich tract