1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgtaaaatttgttatttacctgcatgtgacttattgctgaaaatctttacctcattgattataatttactttgtcacaccaaaaattttcttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTAAGAGTGCTGAGCAAAGACATAATAATTCAAATGCAAATGGTTGCATTG
species | Glycine max |
transcript | GLYMA08G19150.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAG TTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTEST: gi|14011720|gb|BG726642.1|BG726642
genomic: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAGgtattggaat ... ttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCT
EST: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAG TTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTEST: gi|19271298|gb|BM887554.1|BM887554
genomic: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAGgtattggaat ... ttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCT
EST: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAG TTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTEST: gi|51335965|gb|CO979831.1|CO979831
genomic: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAGgtattggaat ... ttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCT
EST: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAG TTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTEST: gi|22540857|gb|BU090700.1|BU090700
genomic: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAGgtattggaat ... ttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCT
EST: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAG TTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTEST: gi|27424181|gb|CA935701.1|CA935701
genomic: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAGgtattggaat ... ttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCT
EST: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAG TTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCT
genomic: CCTCACCTGAAGCAAATAGCTTTTGCCACCTGCAACAGATCATGGATCAGgtattggaat ... ttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCT
tttacctcattgattataatttactttgtcacaccaaaaattttcttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTAAGAGTGCTGAGCAAAGACATAATAATTCAAATGCAAATGGTTGCATTG
tcttgac putative branch site (score: 3)
ttttctt CT-rich tract
tcattgattataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtaaaatttgttatttacctgcatgtgacttattgctgaaaatctttacctcattgattataatttactttgtcacaccaaaaattttcttgactgcagTTGGATATTAAAACCAAAATGTGCATTAGGGACAGTCTATACCGCTTGGCTAAGAGTGCTGAGCAAAGACATAATAATTCAAATGCAAATGGTTGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - -acctgca
- - - - - - - - - - - - -gtgactt
- - - - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacacc