1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttaagttattctcactgggctttgtagatattaggcatggttcaaacacgtaatcatttagatagcctgatgagaccctttatgtattgcaacttgttttgcttcattttttttaaagttgcatatttctacatgatgcttaattttggttcttttacatttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
species | Glycine max |
transcript | GLYMA08G19130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACA ATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAGEST: gi|193645000|gb|FK588806.1|FK588806
genomic: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
EST: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGGATACA ATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAGAAGGAEST: gi|8670096|gb|BE191203.1|BE191203
genomic: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAGAAGGA
EST: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACA ATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAGEST: gi|9819650|gb|BE555163.1|BE555163
genomic: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
EST: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACA ATGTTTATCATGAAAAGCAAGAAGGTTTTTGATCGTGAAGCAGEST: gi|151397861|gb|EV267734.1|EV267734
genomic: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAG-AGGTTTTTGATCGTGAAGCAG
EST: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACA ATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAGEST: gi|207812273|gb|GD784446.1|GD784446
genomic: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
EST: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACA ATGTTTATCATGAAAAGCGAGAGGTTTTTGATCGTGAAGCAGEST: gi|10255431|gb|BE823197.1|BE823197
genomic: TGACCAGCTAACTGAGGATGCTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
EST: TGCTATGAAGCTGATGGAGAATGGTGAATACA ATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAANNAGEST: gi|208307048|gb|GE101560.1|GE101560
genomic: TGCTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
EST: CTATGAAGCTGATGGAGAATGGTGAATACA ATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
genomic: CTATGAAGCTGATGGAGAATGGTGAATACAgttaagttat ... ttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
aagttgcatatttctacatgatgcttaattttggttcttttacatttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
gcttaat putative branch site (score: 4)
ttcttttacatttttt putative PPT
ttaattttggttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagttattctcactgggctttgtagatattaggcatggttcaaacacgtaatcatttagatagcctgatgagaccctttatgtattgcaacttgttttgcttcattttttttaaagttgcatatttctacatgatgcttaattttggttcttttacatttttttccagATGTTTATCATGAAAAGCAAGAGGTTTTTGATCGTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC