1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcccccttactccatttttcaatttgtgtatcatatatatttcatatcgtgacactatttatatacactaaaacatgtatggtttccctttggtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGAAGTGAAATA
species | Glycine max |
transcript | GLYMA08G18410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|6071299|gb|AW100686.1|AW100686
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|209715542|gb|BW684762.1|BW684762
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|151406500|gb|EV276315.1|EV276315
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|209726604|gb|BW666522.1|BW666522
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|209715541|gb|BW684761.1|BW684761
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|151395707|gb|EV265584.1|EV265584
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|298169812|gb|HO018436.1|HO018436
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|209721770|gb|BW666390.1|BW666390
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|20813375|gb|BQ297853.1|BQ297853
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|193538078|gb|FK494609.1|FK494609
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAEST: gi|209726603|gb|BW666521.1|BW666521
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTA
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCEST: gi|192297078|gb|FG992014.1|FG992014
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
cgtgacactatttatatacactaaaacatgtatggtttccctttggtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGAAGTGAAATA
cactaaa putative branch site (score: 2)
tatttatatacactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcccccttactccatttttcaatttgtgtatcatatatatttcatatcgtgacactatttatatacactaaaacatgtatggtttccctttggtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGAAGTGAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG