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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaactgaaacttcatgcctgcatttgaatttccaatgaagcataacaataatattatggtatatgaacattttgataccaaaatgacttctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG

Basic information

species Glycine max
transcript GLYMA08G16870.4
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 9
-----------------------------------------agaaactgaaacttcatgcctgca---tttgaatttccaatgaagcataacaataatattatggtatatgaacattttgataccaaaatgacttctt---tttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG
                                               ||||| || |   | | |   | ||   |    |||   |||  |  |  |   |   |  ||  |  || | |||  || |||  |||||   ||||||||||  |||||||||| |||||| ||||| || |||||| | |||||| | |||||||||
gtctgcattgatctcctttcctgcttagttgtgctctttttctttgatgaaaatttacttcagtaaaatatgggatgttcatgctccatgtctgtccttgcaatattaatataatttcttatatgaagatgttttcttgtttttcagGCATTTCTTGCTTTCTATGTCATTAATGATCTGCAAATGTCACAATCATCTAAAGCTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337979|gb|CO981845.1|CO981845
EST:     AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAG                         GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
EST: gi|11274169|gb|BF324537.1|BF324537
EST:     AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAG                         GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
EST: gi|6667043|gb|AW278502.1|AW278502
EST:     AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAG                         GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
EST: gi|18040825|gb|BM309119.1|BM309119
EST:     AGGTTGCTCTTGTTTATGTTCTTACNAGATTGGTTCTCAACGTTTCACAG                         GCATACCTTGCTTTCTTTGTCATTAATGACCTACAAATGGCCCAATCAGCC
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaataatattatggtatatgaacattttgataccaaaatgacttctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG
                                           cttctttttc  CT-rich tract
     taatattatggtatat  TA-rich tract