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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctagtgaaatttccatagaaatcaataatatgttaatatgaattactaatgtatacaactaactatctttgaagGTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAG

Basic information

species Glycine max
transcript GLYMA08G16870.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 6
------------------gtaagttcta-gtgaaatttccatagaaatcaataatatgt------taatat-gaattactaatgtatacaactaactatctttgaagGTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAG
                   |   || ||  |  | ||| |  |   |||| | || | |      |  ||| ||   | |    ||| ||  ||| |    || |||||||||||||||||||| ||||||||||| ||  | || |||| |  || |||   | | |||| || |||| |||||||||||
gttagcacctctctgcatattgattttacatatagttttctaaatcatcactcatctctatggagtgctattgaggcagtttgttattcatttaaatgatcttaaagGTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGCAAACCACATACACTTGTTGATATTGAAAATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667043|gb|AW278502.1|AW278502
EST:     ACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATG                         GTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATC
genomic: ACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATGgtaagttcta ... atctttgaagGTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATC
EST: gi|18040825|gb|BM309119.1|BM309119
EST:     ACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATG                         GTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATC
genomic: ACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATGgtaagttcta ... atctttgaagGTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaataatatgttaatatgaattactaatgtatacaactaactatctttgaagGTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAG
                                     aactaac  putative branch site (score: 1)
                                           ctatcttt  CT-rich tract
     ataatatgttaatatg  TA-rich tract