1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataaataaatacaattgtgtgtgaatctatatatagctggttcttaattcaacttttccggatgctaggtccaatagctgattattttgctatgatgcagGTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTGGTGTCACCAACGCTGATTATTATAGGAAAAGTTGTTGAACTATCACCAT
species | Glycine max |
transcript | GLYMA08G16030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACACTTCATCAGCGCACG GTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTGEST: gi|5677800|gb|AI938930.1|AI938930
genomic: CACACTTCATCAGCGCACGgtaagcatga ... tatgatgcagGTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTG
EST: AGACCCCAGCTGCAGCCATTGAGCGAGGAACCACACTTCATCAGCGCACG GTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTGEST: gi|254336247|gb|GR842426.1|GR842426
genomic: AGACCCCAGCTGCAGCCATTGAGCGAGGAACCACACTTCATCAGCGCACGgtaagcatga ... tatgatgcagGTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTG
EST: AGACCCCAGCTGCAGCCATTGAGCGAGGAACCACACTTCATCAGCGCACG GTGTTTGCTGAACTAAAGGACCTTCACGAGAEST: gi|254336248|gb|GR842427.1|GR842427
genomic: AGACCCCAGCTGCAGCCATTGAGCGAGGAACCACACTTCATCAGCGCACGgtaagcatga ... tatgatgcagGTGTTTGCTGAACTAAAGGACCTTCACGAGA
EST: AGACCCCAGCTGCAGCCATTGAGCGAGGAACCACACTTCATCAGCGCACG GTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTG
genomic: AGACCCCAGCTGCAGCCATTGAGCGAGGAACCACACTTCATCAGCGCACGgtaagcatga ... tatgatgcagGTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTG
aattcaacttttccggatgctaggtccaatagctgattattttgctatgatgcagGTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTGGTGTCACCAACGCTGATTATTATAGGAAAAGTTGTTGAACTATCACCAT
ttttgct CT-rich tract
tgattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaataaatacaattgtgtgtgaatctatatatagctggttcttaattcaacttttccggatgctaggtccaatagctgattattttgctatgatgcagGTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTGGTGTCACCAACGCTGATTATTATAGGAAAAGTTGTTGAACTATCACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- aaataaa
- - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - -gctggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatt