Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatgcatgcctaaacctcatctttttaattatataaatatttgccaaatctttctatgctaattgaggaatcatattactgattgaatacatagGCTCTTGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAGTCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGAAT

Basic information

species Glycine max
transcript GLYMA08G15920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G32850.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtcatgcatgcctaaacctcatctttttaattatataaatatttgccaaatctttctatgctaattgaggaatcatattactgattgaatacatagGCTCTTGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAGTCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGAAT
        |   ||   | || |  ||  | |    | ||   || |  | |  |  ||  |   | |  |   |    | ||  | |   || | |||||||||||| |||||| | ||||| |||||||| ||||| | ||| |||||||| || |||||||| ||| ||||||| || || || || ||||| ||||
-------gtatgtgatgacactttttcaatctctccagattgctaat--ctatttggttgaaacttgaaagtaaaggtttgtttttaa--aaaaaaatagGCTCTTGGATGTCTCTTGTTTCGGATATGCTATTTCAAGAATGCATTTGATGGAGAATCAAAGCTGCAAATCTTAAACGGGAATTATCGTATTCCAGAAT

upper sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtcatgcatgcctaaacctcatctttttaat-tatataaatatttgcca------aatctttctatgctaattgaggaatcatattactga--ttgaa---tacatagGCTCTTGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAGTCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGAAT
||||||||   || | | |   |  |    | | | |   | |  |||||| |      ||  ||||| ||||  || |   | |  |   ||||  || |    |    |||| |||||||| ||||| |||||||||||||||||||||  ||| |||||||| || |||||| | ||| ||||||||||||||||||||||||| ||||
gtaagtcagttatactttatttttgttcaatgagtctgggttatgatttgctattcaagaagttttctgtgctttttaatacaaccaaaacctgaaattcatctttttgcagGCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGATGGTGAATCAAAGTTACAAATCTTAAATGGAAACTACCGCATTCCAGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccaaatctttctatgctaattgaggaatcatattactgattgaatacatagGCTCTTGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAGTCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGAAT
                                     tactgat  putative branch site (score: 2)
                             aatcatatta  TA-rich tract