1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctattttatcttccttttgttgctgacacacacttttcttgatgtaaaaatttcattcttatggggataaaaatctttcagtgtttttcaatttcgttagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAG
species | Glycine max |
transcript | GLYMA08G15150.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTG ACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAEST: gi|207752406|gb|GD726247.1|GD726247
genomic: AGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTGgtaagatact ... atttcgttagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACA
EST: AGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTG ACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAEST: gi|20811387|gb|BQ295865.1|BQ295865
genomic: AGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTGgtaagatact ... atttcgttagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACA
EST: AGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTG ACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACA
genomic: AGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTGgtaagatact ... atttcgttagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACA
aaaaatttcattcttatggggataaaaatctttcagtgtttttcaatttcgttagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAG
tttcgtt CT-rich tract
ataaaaatctttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattttatcttccttttgttgctgacacacacttttcttgatgtaaaaatttcattcttatggggataaaaatctttcagtgtttttcaatttcgttagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -cttcctt
- - - - - - - - -tgttgct
- - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcagtg