Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG

Basic information

species Glycine max
transcript GLYMA08G14670.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g09250.3 (Oryza sativa), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                   ||| |    |||     |||  |  ||  ||  | ||   |  |  | |  |  ||  |    |        ||   | | ||   || ||   || ||| |  |||   |||     || || ||          |||| || || || || || |||||||| ||||| || |||||||||||||| || || || |||||||| ||||| || ||||| || |||||||||||||
--------------------------------------------------gtaccaaccatat-atcaaatcctttggctagcttttcgcattgaaacgtcgatattcttccgga--------aacttttttttatatataacctgataagaactttggctttt-----gttttcgt----------agCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACCTTTCCGCACCTCAAACATTCCGATCCAAGGAGATCTCCAAGAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgtttta-attgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                          | | |  ||   |  |   ||  | ||| || || |  | | ||||| ||  | |     | || |   | || || ||| || |  | |||     ||||| || || || ||||| |||||||| ||||||||||| ||||||||||| || || ||||||||||| ||| | || ||||| || ||||||||||| |
-----------------------------------------------------------------------------------------gtgggaacctagtatctctcttctattaagatgaagtgtttttttggcaaatgacgttattgcaa-taactcttctatattttcattttcatg-----cagCCCACCTCAATCGTGAGCTACAACCACTTGGGAAACAACGATGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                   |||  |||| |     | ||   | ||            ||||  | |  ||||  |  |   | |  || | | || |  |   | | ||  ||        ||||| || || || ||||| |||||||| ||||||||||| || |||||||| || || ||||||||||| ||| | || ||||| || ||||||||||| |
-----------------------------------------------------------------------------------gtacaatttatcaa--tgaaacctgatatccccccttcgaaatgtttt--tggcagacgac--atacttacaataat-tcgtgtatatgttcatg--------cagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G071174_T01 (Zea mays), 3'ss of exon 1
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaa--taataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                            ||| || |  |||| | || |    |||  | || || |     |||| | || |   | |  ||   || |   ||   ||||  |   |   | ||||| ||   |   |||| || |  |  |    | ||     |  ||  || ||  |       |||| || || || |  || ||||||||| |||||||||| || |||||||||||||| ||||| |||  |||||| || || || || ||||||||||  |
-----------------------gtacgtaccatcgtcatat-atgtatatctctatatataatgctgggattaattaagataatttgtgtttgacattcaagaa---taatctatccatctttaaatattggaattattaaagattggcacattggataata----aggtggatttgttttttcccgtagCCCACCTCAATTGCAAGCTACAACCATCTGGGAAACAACGACGGCATGAATCTCTCTGCCCCACAAGTCTTCCGGTCCAAAGAGATCTCCAAGAGCAGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 2
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                   |||  |||| |    | |||| | |  ||        |  ||  |||| || |  | |  |  | |  || | | || | ||   | | ||  ||        ||||| || || || ||||| |||||||| |||||||||||  | |||||||| || || ||||||||||| ||| | || ||||| || ||||||||||| |
-----------------------------------------------------------------------------------gtacaatttat-caatgaaacctga--tatccccccttcgaa--atgtttttggcagacgtc-atacttacaataat-tcttgtatatgttcatg--------cagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACAACGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 4
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                      ||||||     | |||    | ||| ||||    |     | |   |   | ||| ||     |        | |    | ||  |||  | ||   || ||||| || || || ||||| |||||||| ||||||||||| || | |||||| || || ||||||||||| ||| | || ||||| || ||||||||||| |
------------------------------------------------------------------------------------cttcattta-gcacataagaacttatttaaatgtgttggg-cacttaatcaccaaaacataatagaaattgccaagggcacatttccctt--tcattcatg-cagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGACATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G177461_T01 (Zea mays), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgc-ttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                     || ||  | |||    ||| |  |   ||      || | ||   | |||   |  |   | || ||   ||||  || |  | ||  |||     |    |||    |      |   |   | ||||  | || || ||| ||  |   |||| || || || |  || ||||||||  | |||||||||||||||||||||||||| || || |||  |||||| || || || || ||||||||||  |
------------------------------------gtacattccttgt----ctattgctgggggcctgggattaagatgaattatttgtctttcacattcaagaataatcgaactttattagcatatcagataatataaggtggattctttttttctttctttttttcgtgtttgtgctg--tcgtagCCCACCTCAATTGCTAGCTACAACCACCTAGGAAACAATGATGGCATGAATCTCTCTGCGCCACAAGTCTTCCGGTCTAAAGAGATCTCCAAGAGCAGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataa-aataaaat--aatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                               | ||||| | | ||| |  ||   ||| ||||  | | | |  | |||   |  | ||  ||||| ||  |  | || |||     ||  || | |||| || || || || |||||||||||| | || ||||| || ||||||||  | ||||| |||||||| ||||| || ||||| || || ||||||||||
----------------------------------------------------------------------------------------------gtacttaatcctaaataagtatcctaattaaatttattttatatggtaacgttacaaaacgaaattaat--tgcatttatct-----atatgt-atagCCGACGTCGATTGTCAGTTACAACCATCTTGGGAACAACGACGGCATGAACTTGTCAGCACCTCAAACATTCCGGTCAAAGGAGATATCGAAGAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgtt-ttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                            || || ||||  |     | || | |       |  | |  ||   | |  ||    |  |  ||| | |  || ||||| |  ||  |   | | |||| || || || ||||| ||||| || ||||||||||| ||||| |||||||||||||| || || || ||| | || ||||| || ||||| |||||||
--------------------------------------------------------------------------------------------gtttgtttaacttgcgtatcaagttactctttcttgt-tactgaaaatatttgtcacaagactttggtttcattgattgtgt--gtttttgtttatagCCTACTTCAATTGTGAGCTACAATCACTTGGGAAACAACGATGGAATGAATCTCTCAGCTCCACAGACTTTCAGATCTAAGGAGATCTCCAAAAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtg-ttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                          |  ||   |||||  ||  |||   | || |||  |||  || ||  ||     | | |||| || |         ||| |  || |||        ||||| || || || ||||| || || |||||||||||||| || || ||||| |||||||| || || || |||||||| ||||| ||||| ||||||||||
-----------------------------------------------------------------------------------------gtaatagaattaaagcttgttta---tcaagtaacctaacttgcttctcttctgttagtgaaggaactaag------aatggattttgtgg-------cagCCTACTTCGATTGTGAGCTATAATCATTTGGGAAACAACGACGGGATGAACCTCTCAGCGCCACAGACTTTCCGCTCTAAGGAGATTTCAAAGAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgt-tggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                         ||         || |||||      || || ||||   |   |||| ||||  | | ||  ||  ||  | |    | | | | |||| ||  ||   |  || || || ||||||||||||||| || ||||| || |||||| |||||||||| |||||||||||||| || || ||||||||||||||||| ||||| || |||||||||||||
------------------------------------------------------------------------gtatatcatttttagcatttcctctgttgaaatttaga-attttaaagtaaataagtatgcatgtataggattatgtatgaataatgatattg-aaagatgatgatggtg-gtgacagCCAACATCCATTGTGAGCTATAACCATCTGGGAAACAACGATGGCATGAATCTGTCTGCTCCTCAAACCTTCCGCTCCAAGGAGATCTCCAAGAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: PP1S267_10V6.1 (Physcomitrella patens), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                         | |   |  || |||  | || || || | ||  || ||             |||   |||  |||    | |  | |     |  |||| | | | |||   | ||     |||||| || || || ||||| ||||| |||||||||||||| |||||||||||  | ||||| ||||| ||||| || || ||||| || ||||| |||||||
------------------------------------------------------------------------gtgattcctaagcatc--tcgtttggttca-ctggaagtatc-cggttctctttaaatcgttttctatggtttgtcacgatgtatcctgttctgaatctctgaattattgtgcacagCCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAACTTGTCAGCACCTCAGACCTTTCGTTCCAAGGAGATCTCCAAAAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 5
--gtacaacttttgttgttttgcttactaa---tactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaa-taatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
  |  | |  |    ||| | |   | |||   || ||  ||  | | || || |||    |     | |  |    ||       |  | |||  ||| | ||  ||||  | || |         ||  |    || | ||||  ||   ||   |  | |||      ||||||     || || |  ||||||||| || || || || |||||||||||||| ||||| ||||| |||||  | || ||||||||||| ||||| || ||||| || |||||||||||||
gtgagccaagtgcaatgtgtagaggaataaatgtaataaagccttctaacttgcgctgaatccaacttagaatgtctattttttttggat-tcaggtgtgt-ctagaactgaagtttatgctttgcgaagctggaatgattgctatgaa---agctttgcactgaacccacaattgt-----tggtgtgc-acagCCAACGTCAATTGTTAGCTACAACCATTTGGGCAACAACGATGGAATGAACTTGTCCGCCCCTCAAACATTCCGTTCCAAGGAGATCTCCAAGAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: EFJ27629 (Selaginella moellendorffii), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                                                        ||||||   || ||         |   | | |     ||   |  |   ||||||        |  |||||||| || || || || ||||| ||| | || ||||||||||| |||||||| || || |||||||| ||| | || |||||||| |||||||||||||
-----------------------------------------------------------------------------------------------------------------------gtaaaatctcgtttt---------tctcgtatttttccgactctaaatccgtcttgtc------ttccagCCAACCTCCATTGTCAGCTACAATCATCTTGGTAACAATGATGGAATGAATCTATCTGCGCCTCAAACATTCAGATCCAAGGAAATCTCCAAGAGCAATG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 5
lower sequence: EFJ37320 (Selaginella moellendorffii), 3'ss of exon 6
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                                                                                                                        ||||||   || ||         |   | | |     ||   |  |   ||||||        |  |||||||| || || || || ||||| ||| | || ||||||||||| |||||||| || || || ||||| ||| | || |||||||| |||||||||||||
-----------------------------------------------------------------------------------------------------------------------gtaaaatctcgtttt---------tctcgtatttttccgactctaaatccgtcttgtc------ttccagCCAACCTCCATTGTCAGCTACAATCATCTTGGTAACAATGATGGAATGAATCTATCTGCGCCGCAAACATTCAGATCCAAGGAAATCTCCAAGAGCAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233961|gb|BE802849.1|BE802849
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|14011656|gb|BG726578.1|BG726578
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|5678158|gb|AI939288.1|AI939288
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|20813067|gb|BQ297545.1|BQ297545
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|193606337|gb|FK556054.1|FK556054
EST:     TGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: TGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|15287268|gb|BI471159.1|BI471159
EST:     GGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: GGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|22524419|gb|BU083230.1|BU083230
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACCTCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|26058223|gb|CA801137.1|CA801137
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|14259830|gb|BG882738.1|BG882738
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|120494127|gb|EH222294.1|EH222294
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|120492592|gb|EH220759.1|EH220759
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|120492384|gb|EH220551.1|EH220551
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|193580598|gb|FK538227.1|FK538227
EST:     AGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: AGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|15204497|gb|BI427265.1|BI427265
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: gi|20448975|gb|BQ253099.1|BQ253099
EST:     CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
                           ttttaat  putative branch site (score: 3)
              aagtaaattgatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA