1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
species | Glycine max |
transcript | GLYMA08G14670.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|14011656|gb|BG726578.1|BG726578
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|5678158|gb|AI939288.1|AI939288
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|20813067|gb|BQ297545.1|BQ297545
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|193606337|gb|FK556054.1|FK556054
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: TGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|15287268|gb|BI471159.1|BI471159
genomic: TGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: GGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|22524419|gb|BU083230.1|BU083230
genomic: GGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACCTCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|26058223|gb|CA801137.1|CA801137
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|14259830|gb|BG882738.1|BG882738
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|120494127|gb|EH222294.1|EH222294
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|120492592|gb|EH220759.1|EH220759
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|120492384|gb|EH220551.1|EH220551
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|193580598|gb|FK538227.1|FK538227
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: AGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|15204497|gb|BI427265.1|BI427265
genomic: AGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATEST: gi|20448975|gb|BQ253099.1|BQ253099
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
EST: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCGGTGTTGGTGGATTTCCTAGTAGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAAT
ggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
ttttaat putative branch site (score: 3)
aagtaaattgatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacttttgttgttttgcttactaatactattgctatatcacgtgtgctactacttttattggttaataataaggacagagtatcatttgtatgcttaaactttaattaaaataaaataaaataatgtgttggctaaaaatggagaagtaaattgatgttttaattgtcttggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATTTGGGAAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCGAAGGAAATTTCCAAGAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA