1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aataagctgtctcaaacacaattttgctagttgcataattttctggtattttatgacttgcttatcattaaaccattgtctgtattttcttgtgttgcagAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAG
species | Glycine max |
transcript | GLYMA08G14290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA AGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAGEST: gi|207751079|gb|GD725298.1|GD725298
genomic: CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAgtgagttaat ... tgtgttgcagAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAG
EST: CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA AGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAGEST: gi|120532498|gb|EH260631.1|EH260631
genomic: CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAgtgagttaat ... tgtgttgcagAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAG
EST: CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA AGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAG
genomic: CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAgtgagttaat ... tgtgttgcagAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAG
gtattttatgacttgcttatcattaaaccattgtctgtattttcttgtgttgcagAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAG
tattttctt CT-rich tract
ttatcattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataagctgtctcaaacacaattttgctagttgcataattttctggtattttatgacttgcttatcattaaaccattgtctgtattttcttgtgttgcagAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -gctgtct
- - - - - - caaacac
- - - - - - - - - - - -ttgctag
- - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctg