1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atctggttttcatttatttctgtactgtttgaattttatgcatcagtcaaccatgcccatgatctagttgtcttgatggtggtttcttattctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTTGTGATGAACCCACAGAATGGTTTGACAATTAAACCATTCAGGAAGGCTC
species | Glycine max |
transcript | GLYMA08G13320.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG TTCTACGATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTTEST: gi|207847520|gb|GD820113.1|GD820113
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtaatattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
EST: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTTEST: gi|193685533|gb|FK627037.1|FK627037
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtaatattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
EST: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTTEST: gi|208178046|gb|GD976473.1|GD976473
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtaatattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
EST: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTTEST: gi|208095905|gb|GD894175.1|GD894175
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtaatattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
EST: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtaatattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
gtcaaccatgcccatgatctagttgtcttgatggtggtttcttattctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTTGTGATGAACCCACAGAATGGTTTGACAATTAAACCATTCAGGAAGGCTC
tcttgat putative branch site (score: 4)
tttcttattctatttc putative PPT
tttcttattctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctggttttcatttatttctgtactgtttgaattttatgcatcagtcaaccatgcccatgatctagttgtcttgatggtggtttcttattctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTTGTGATGAACCCACAGAATGGTTTGACAATTAAACCATTCAGGAAGGCTC
-tctggtt
- - - - - - - - - tctgtac
- - - - - - - - - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - -catgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtg