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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtttctctatattaacgtatagatctcttcatccctgtaatgataagaaacaggagtattttaaagattctttttctttttttattgatctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTG

Basic information

species Glycine max
transcript GLYMA08G13300.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13300.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0094g01550.t01 (Vitis vinifera), 3'ss of exon 5
-------atgtttctctatattaacgtat-agatctcttcatccctgtaatgataagaaacaggagtattttaaagattctttttctttttttattgatctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTG
        |   ||  |   |||    || | |  | ||||||    || |  ||  || |||       | ||   ||  |||    |   | | | | | |||||||||||| ||||| ||||| |||||||| || || |||||||||||  | ||||||||||| |||||  ||||| |   |||||| ||| | || ||||||
agggaagttacctcaattgcttatgacatgaaaaatattcatcta-atagtcttatcaatcag-------tcaagactttatttatggtagatctggctttatgacagAAAATATGGTCTCGATGACAACACTATTGATTTTATTGGTCATGCAATAGCGCTTCATAGAGATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208192944|gb|GD987951.1|GD987951
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|207734492|gb|GD712443.1|GD712443
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|163927330|gb|EH040145.1|EH040145
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|151394091|gb|EV263962.1|EV263962
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACGCTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|192326977|gb|FK019239.1|FK019239
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|4283991|gb|AI440725.1|AI440725
EST:     TTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: TTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|192328654|gb|FK023154.1|FK023154
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|24136625|gb|BU927135.1|BU927135
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|151407978|gb|EV277793.1|EV277793
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACCATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|151411945|gb|EV281756.1|EV281756
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|192327650|gb|FK020669.1|FK020669
EST:     ACCCATGATGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|254321748|gb|GR825065.1|GR825065
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|120532856|gb|EH260989.1|EH260989
EST:     ATGAAGGGATGGAAAACCTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGCTCTTGGATGATAACACTATAGACTTCATTGGGTCAATGCTT
genomic: ATGAAGGGATGGA---C-TTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGG-TCTTG-ATGATAACACTATAGACTTCATTGG-TCA-TGCTT
EST: gi|8826330|gb|BE210060.1|BE210060
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         ACAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTGTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaaacaggagtattttaaagattctttttctttttttattgatctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTG
                                       tattgat  putative branch site (score: 3)
                        ttctttttcttttttt  CT-rich tract
           agtattttaaagattc  TA-rich tract