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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaactgtaaccattcattgcagaattattttctttgctgaacaatgaaaccttgctttattgaactaatcgcattccaaatcatctcagGTTGCTGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTACTGAGTGTAATCCCCACAGGGAATGGGGGCACGATAGAGC

Basic information

species Glycine max
transcript GLYMA08G13110.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttaactgtaaccattcattgcagaattattttctttgctgaacaatgaaaccttgctttattgaactaatcgcattccaaatcatctcagGTTGCTGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTACTGAGTGTAATCCCCACAGGGAATGGGGGCACGATAGAGC
     |||      | |||  || |    |   ||   ||  | | || |   | ||| |  || |       | |  ||  |||  |    |||||||||| |||||||||||||||||||| |||   || || |||||| |  |  ||   |||||||| || ||  | || || || || ||||| ||||
----gtaaagagtgcgatttgttacgttctggcttgtgtttataatcatt---agcttacgctagt------cttgatttgaaaacaaatatagGTTGCTGAAATTCTCAAAGATCGTCCATCTTGGCTCCGAGATTGTCGAAGTGTGGATACTCTGAGTGTGATACCTGCTGGAAACGGTGGGACGATCGAGC

upper sequence: GLYMA08G13110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttaactgtaaccattcattgcagaattattttctttgctgaacaatgaaaccttgctttattgaactaatc-gcattccaaatcatct-cagGTTGCTGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTACTGAGTGTAATCCCCACAGGGAATGGGGGCACGATAGAGC
     |||  ||     ||| ||  |   | || || | |  | |  |  | ||      | ||   |   ||||   | | |||||  | |  |||| ||||| || ||||||||||||||||| ||||  ||||||||||||||  || |    |||| ||| || ||||| || ||||| || || || ||||
----gtaatggtgtt--ttctttttattttaatcttgtgttgtaagaagcggaa----attctacgaaggcaatctaaacttcaaatactgtgtagGTCGCTGAAATCCTCAAAGATCGTCCATCTTGGTTCCGTGACTGTCGATGTGTCGAGACTCTGAATGTTATACCCACTGGAAATGGTGGTACTATCGAGC

upper sequence: GLYMA08G13110.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 5
gtatttaactgtaaccattcattgcagaattatttt--ctttgctgaacaatgaaaccttgctttattgaactaatcgcattccaa-atcatctcagGTTGCTGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTACTGAGTGTAATCCCCACAGGGAATGGGGGCACGATAGAGC
                | |  |  | || || ||||  || |  || ||   |     | | |||  || |  ||     |   || ||| |  |||||||| || || ||||||||||||||||| |||| ||||||||| ||||||||| ||||| ||||||||||||| ||||| |||||||| || ||||| |
--------------gtacttgtc-ctgacttgtttttactctattgtactgcg----ttagttttggtgta--aagtatgtggtaacatctttacagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgaacaatgaaaccttgctttattgaactaatcgcattccaaatcatctcagGTTGCTGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTACTGAGTGTAATCCCCACAGGGAATGGGGGCACGATAGAGC
                            aactaat  putative branch site (score: 2)
                                              tcatctc  putative PPT
                     tttattgaactaat  TA-rich tract