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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttattgtctgttaaggtcgatcttgtttttgttatgctcatataacaaatgggtaatataaggagttttgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTGTTTAGGAATTTGGACCCGTGTGACCAGTCACTGCTAAATTTACAGAGCG

Basic information

species Glycine max
transcript GLYMA08G12570.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12570.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g01700.t01 (Vitis vinifera), 3'ss of exon 5
gtaatgttattgtctgttaaggtcgatcttgtttttgttatgctcatataacaaatgggtaatataaggagtttt--gttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTGTTTAGGAATTTGGACCCGTGTGACCAGTCACTGCTAAATTTACAGAGCG----
    | |      ||   |    | ||  | |     | |||| | | |  || || ||||| | ||| | || |  |||||||||||||||||||||||| || ||| |||||||||| ||||  |    ||| || |  |      ||     |||| |  |  |  | |  |||| |  ||      
---gtatgccaccctaccatctaccattctttcagaatcatgc-cttttctcatattggtaacacaagaaattatccgttttgcagCTGGAAGAACAATTCCAAGCTGCAGTTGCCTGCTTGAACCAAAGAGAGATGGTATGCG----GGGTTTATGTGGCATGGAAAGGATGCATTTTCGTAGTTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397667|gb|EV267540.1|EV267540
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTACTACTATTATTTCATCAG                         CTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAGgtaatgttat ... tgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
EST: gi|192296942|gb|FG990273.1|FG990273
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAG                         CTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAGgtaatgttat ... tgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
EST: gi|254319449|gb|GR830700.1|GR830700
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAG                         CTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAG-TG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAGgtaatgttat ... tgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
EST: gi|151404363|gb|EV274173.1|EV274173
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATCATTTCATCAG                         CTGGAAGAACAATTCAAAACCGAAGTTGCCTGCCTGAATTATCACGAGGTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAGgtaatgttat ... tgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
EST: gi|254319450|gb|GR830701.1|GR830701
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAG                         CTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAGgtaatgttat ... tgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
EST: gi|192301914|gb|FG995532.1|FG995532
EST:     GACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAG                         CTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG
genomic: GACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAGgtaatgttat ... tgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttgttatgctcatataacaaatgggtaatataaggagttttgttttgcagCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGAATTATCACGAGGTGTTTAGGAATTTGGACCCGTGTGACCAGTCACTGCTAAATTTACAGAGCG
                atataac  putative branch site (score: 3)
                                          ttttgtttt  putative PPT
                atataacaaat  TA-rich tract