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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttatatgtgcttgctgaatggaaattattattaggactttctttctgaatagtaggaactatttcctgctctgatgtcattttgtgtattctctagGTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGGAGTGCAAAAGTGCTG

Basic information

species Glycine max
transcript GLYMA08G12370.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12370.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 5
gtttgcttatatgtgcttgctgaatggaaattattattaggactttctttctgaatagtaggaactatttcctgctctgatgtcattttgtgtat-tctctagGTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGGAGTGCAAAAGTGCTG
                         | |  || || |  | ||| |   |   |||| |  |    |  | |  |  |||  | |||||  |  | |||  ||||||| || ||||| ||||| |||||| | ||||| ||||| |||||||||||||| 
-------------------------gtatgttcttctctg-actgttgcttaaaataatgagtcacaactgcatcaatgaattaatttttggcttctctacagGTTGATCCACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgaatagtaggaactatttcctgctctgatgtcattttgtgtattctctagGTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGGAGTGCAAAAGTGCTG
                           ctctgat  putative branch site (score: 4)
                                             tattctct  putative PPT
               aactattt  TA-rich tract