1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taatttcctaactaatgcttacttgaatgccactttcagaatattttaccatgcaaaatttctagaccactgacctcattctgcttatttctccttgcagTCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGGTGATGATCTAGGTGTGCAATTAAGAGATTGCGATATATCATGGAAGGTT
species | Glycine max |
transcript | GLYMA08G11980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAG TCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGGEST: gi|120533588|gb|EH261721.1|EH261721
genomic: GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAGgtaatttttt ... ctccttgcagTCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGG
EST: GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAG TCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGGEST: gi|9901283|gb|BE610251.1|BE610251
genomic: GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAGgtaatttttt ... ctccttgcagTCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGG
EST: GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAG TCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGG
genomic: GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAGgtaatttttt ... ctccttgcagTCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGG
ttaccatgcaaaatttctagaccactgacctcattctgcttatttctccttgcagTCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGGTGATGATCTAGGTGTGCAATTAAGAGATTGCGATATATCATGGAAGGTT
cactgac putative branch site (score: 2)
cctcattctgcttatt CT-rich tract
aaaatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttcctaactaatgcttacttgaatgccactttcagaatattttaccatgcaaaatttctagaccactgacctcattctgcttatttctccttgcagTCGAGTCATTGAAGCAGCTGCATGTAAAGTTATCGTTCTGCCTGTGATAGGTGATGATCTAGGTGTGCAATTAAGAGATTGCGATATATCATGGAAGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - -tgcttac
- - - - - - - - - - - - gaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accactg