Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgactaacttgaatatagaaaaaaagagtatgcacttgtattgtatgattattaatgcttggttactttctttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTATTCAATCTTGAATCAGAAGGGTGTCACTCAAGGCTACTATCATTTCTT

Basic information

species Glycine max
transcript GLYMA08G11590.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21479798|gb|BQ576481.1|BQ576481
EST:     GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|26058039|gb|CA800953.1|CA800953
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTANATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193645405|gb|FK590821.1|FK590821
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208209586|gb|GE001855.1|GE001855
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCATACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATNTAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|11687474|gb|BF595150.1|BF595150
EST:     GGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|151401990|gb|EV271803.1|EV271803
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|207830973|gb|GD805031.1|GD805031
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208089758|gb|GD889147.1|GD889147
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193315804|gb|FK281856.1|FK281856
EST:     TATCAGTAGG-AAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTC
genomic: TATCAGT-GGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193402587|gb|FK368085.1|FK368085
EST:     ATATCAGTGG-AAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193623696|gb|FK578210.1|FK578210
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193358951|gb|FK325381.1|FK325381
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATG
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATG
EST: gi|207712083|gb|GD694219.1|GD694219
EST:     GGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193311543|gb|FK275159.1|FK275159
EST:     GGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193609974|gb|FK563536.1|FK563536
EST:     GAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193425810|gb|FK387395.1|FK387395
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTAGT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTT-GT
EST: gi|193520532|gb|FK475107.1|FK475107
EST:     TATCAGTGGAAAAAGTGGGAAGNGGAAAGTATTAAGCAAACTTGGCTTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGT
genomic: TATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGC-TTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGT
EST: gi|208164039|gb|GD965345.1|GD965345
EST:     GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|207831390|gb|GD801654.1|GD801654
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCCAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193396143|gb|FK361898.1|FK361898
EST:     GGAAAAAGGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGAAAAA-GTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193670095|gb|FK608635.1|FK608635
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193709028|gb|FK648598.1|FK648598
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208173942|gb|GD966825.1|GD966825
EST:     TATCAGTAGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTAT
genomic: TATCAGT-GGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTAT
EST: gi|193649087|gb|FK597526.1|FK597526
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAA
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAA
EST: gi|208059897|gb|GD857409.1|GD857409
EST:     GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208160228|gb|GD953484.1|GD953484
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208096729|gb|GD892926.1|GD892926
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208330313|gb|GE132230.1|GE132230
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGGTTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193430744|gb|FK396434.1|FK396434
EST:     TATCACGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: TATCA-GTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193687372|gb|FK633945.1|FK633945
EST:     GTGG-AAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|193515776|gb|FK473352.1|FK473352
EST:     GGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: GGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208208439|gb|GE004328.1|GE004328
EST:     ATATCAG-AG-AAAAGT-GGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: gi|208045636|gb|GD838938.1|GD838938
EST:     ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTAT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatgcacttgtattgtatgattattaatgcttggttactttctttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTATTCAATCTTGAATCAGAAGGGTGTCACTCAAGGCTACTATCATTTCTT
                       tattaat  putative branch site (score: 2)
                                    ttactttctttgctt  putative PPT
         ttgtattgtatgatta  TA-rich tract