1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttaatggtagataatctaatagccactacttttgcttttttatttaatatatgtagttgatgggtgatctatttttcataaatggtgctttgattgtagAACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAAATGTTCAGAATTCTTTCTACAAAGAGTTGGATGTGGATGCCTTGAGACA
species | Glycine max |
transcript | GLYMA08G10990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAG AACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAAEST: gi|5606926|gb|AI901024.1|AI901024
genomic: ATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAGgtatgtacca ... ttgattgtagAACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAA
EST: ATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAG AACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAA
genomic: ATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAGgtatgtacca ... ttgattgtagAACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAA
taatatatgtagttgatgggtgatctatttttcataaatggtgctttgattgtagAACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAAATGTTCAGAATTCTTTCTACAAAGAGTTGGATGTGGATGCCTTGAGACA
atctatttttcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatggtagataatctaatagccactacttttgcttttttatttaatatatgtagttgatgggtgatctatttttcataaatggtgctttgattgtagAACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAAATGTTCAGAATTCTTTCTACAAAGAGTTGGATGTGGATGCCTTGAGACA
- - - - - - - - - - - -ccactac
- - - - - - - - - - - - - - - - -tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgct