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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgagaccatattaaatcttcaattcccttataattgttgaaatgattgcatggaaattttacaatttctgaccagttagtttcttcattattggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA

Basic information

species Glycine max
transcript GLYMA08G09910.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331757|gb|GR843607.1|GR843607
EST:     ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAG                         GCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
genomic: ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGgtaatcaaat ... attggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
EST: gi|15001209|gb|BI322023.1|BI322023
EST:     ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAG                         GCAAACAACGTTGATGCATACATAAATGGGCATGACCACTG
genomic: ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGgtaatcaaat ... attggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTG
EST: gi|254331559|gb|GR843516.1|GR843516
EST:     ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAG                         GCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
genomic: ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGgtaatcaaat ... attggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
EST: gi|12690302|gb|BG156638.1|BG156638
EST:     ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAG                         GCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
genomic: ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGgtaatcaaat ... attggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
EST: gi|213603082|gb|DB960401.1|DB960401
EST:     ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAG                         GCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
genomic: ATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGgtaatcaaat ... attggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
EST: gi|192302904|gb|FG998586.1|FG998586
EST:     AAACAGCTACTTGTTCCCATCTTAGAG                         GCAAACAAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCA
genomic: AAACAGCTACTTGTTCCCATCTTAGAGgtaatcaaat ... attggtccagGCAAAC-AACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCA
EST: gi|254331758|gb|GR843608.1|GR843608
EST:     ATCTTAAACAGCTACTTGTTCCCATCTTAGAG                         GCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC
genomic: ATCTTAAACAGCTACTTGTTCCCATCTTAGAGgtaatcaaat ... attggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcatggaaattttacaatttctgaccagttagtttcttcattattggtccagGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA
                     ttctgac  putative branch site (score: 2)
         aaattttacaatttct  TA-rich tract