1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttctagacttgcatatgtgctaataaaaggttactagagaagtagagatatagagtggaatctttttcatgatcaagctaatctttctcatgtgtctagGTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCCACCGGGGACAGGAAAG
species | Glycine max |
transcript | GLYMA08G09050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGATGCCGATTAAGTATCCCAA GTACTTCANTGGTCTGTTATCACCATGGAAGGGTAT-CTTCTTTTTGGCCCEST: gi|58024561|gb|CX711302.1|CX711302
genomic: TGTGATGCCGATTAAGTATCCCAAgttggtatca ... atgtgtctagGTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCC
EST: GAGGCTGTTGTGATGCCGATTAAGTATCCCAA GTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCCEST: gi|58018662|gb|CX705404.1|CX705404
genomic: GAGGCTGTTGTGATGCCGATTAAGTATCCCAAgttggtatca ... atgtgtctagGTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCC
EST: GAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAA GTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCC
genomic: GAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgttggtatca ... atgtgtctagGTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCC
gagatatagagtggaatctttttcatgatcaagctaatctttctcatgtgtctagGTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCCACCGGGGACAGGAAAG
agctaat putative branch site (score: 3)
tctttctcat CT-rich tract
aatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctagacttgcatatgtgctaataaaaggttactagagaagtagagatatagagtggaatctttttcatgatcaagctaatctttctcatgtgtctagGTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCCACCGGGGACAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - tgcatat
- - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcta