1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cagccataacttatatatgtttttttttactgttgtacataatacattgttttaactgttgaatgatatgattatttgaattataccagtgattccagagGTTCAGAAGGTGCTTATGTTGAAGATTATGTTGGGTCAAACAAGGTATG
species | Glycine max |
transcript | GLYMA08G08190.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAG TEST: gi|209722154|gb|BW651221.1|BW651221
genomic: GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAGgtatccaggt ... gattccagag-
EST: GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAG T
genomic: GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAGgtatccaggt ... gattccagag-
attgttttaactgttgaatgatatgattatttgaattataccagtgattccagagGTTCAGAAGGTGCTTATGTTGAAGATTATGTTGGGTCAAACAAGGTATG
ttttaac putative branch site (score: 2)
ttgaatgatatgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagccataacttatatatgtttttttttactgttgtacataatacattgttttaactgttgaatgatatgattatttgaattataccagtgattccagagGTTCAGAAGGTGCTTATGTTGAAGATTATGTTGGGTCAAACAAGGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA