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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttagtttatttagtttctgcactagcctttatcaatgttttcagtgatatgtctttgcactttacagaatcttcatgtaatactattttgtgcttgcagGTGGTGCATTCTGGCCAACTTTCCTCGTTGCTAACATTGCTGCATTAATTGCAAGTCGTGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGC

Basic information

species Glycine max
transcript GLYMA08G07720.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07720.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtgttagtttatttagtttctgcactagcctttatcaa--tgttttcagtgatatgtctttgcactttacagaatcttcatgtaatactattttgtgcttgcagGTGGTGCATTCTGGCCAACTTTCCTCGTTGCTAACATTGCTGCATTAATTGCAAGTCGTGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGC
      || | | |||| |     |    |    ||||  ||  |||  |        | |  ||  |    | || | ||  | | |||  |||| |||   | |||||||||| |||||||||   |||||| |||| |||||||||||| ||||||| ||||| || |||||||| ||||||||||| ||| ||||||| ||| |
------gtgattatattaaacaagtaggttgaattttaagaaattgtggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttattctgt--ctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgtctttgcactttacagaatcttcatgtaatactattttgtgcttgcagGTGGTGCATTCTGGCCAACTTTCCTCGTTGCTAACATTGCTGCATTAATTGCAAGTCGTGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGC
                              atgtaatactatttt  TA-rich tract