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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaaactttcaattcattgtcattcaaacttatcacattttcacattttatggccaatattattttttttcaatgtgctgatgaaagttattaactttgtattaaatgctgtcagGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGG

Basic information

species Glycine max
transcript GLYMA08G06300.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06300.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 5
gtttcaaactttcaattcattgtcattcaaacttatcacattttcacattttatggccaatattattttttttcaa--tgtgctgatgaaag--ttatta-actttgtattaaatgc--tgtcagGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGG
          ||  |   |  |||  | ||  || |  |||||  | || ||        | |||| | ||   ||  |||  | || ||||  || ||   ||   |||  ||  |  || |||| | |||| |   ||| |||||||| ||||||   ||||||||||||| |||||| || || ||||||||||| ||||
---------gttacacagagcgtccattaacatttttgcatttg-aaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacagGTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAATTTTTTAGCGTCTTGATGCTTGCTTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397505|gb|EV267378.1|EV267378
EST:     AGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAG                         GCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGAT
genomic: AGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAGgtttcaaact ... atgctgtcagGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGAT
EST: gi|19271300|gb|BM887556.1|BM887556
EST:     AGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAG                         GCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGAT
genomic: AGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAGgtttcaaact ... atgctgtcagGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttttcaatgtgctgatgaaagttattaactttgtattaaatgctgtcagGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGG
                            tattaac  putative branch site (score: 1)
                    atgaaagttattaact  TA-rich tract