1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcttattcatgtcatttaggccagtagcttttggacactccatatggaattcatgatggaaaagacaactctcaccctactttaatttgacttctcatagACCATGCAACTTTATTTGAAACTAGGAGTGCATGCCAATTTGAAATCTGTGCTGCTGTCCAATAATAACTTTTTTACCTTTGCTCTTTGG
species | Glycine max |
transcript | GLYMA08G05830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ggaattcatgatggaaaagacaactctcaccctactttaatttgacttctcatagACCATGCAACTTTATTTGAAACTAGGAGTGCATGCCAATTTGAAATCTGTGCTGCTGTCCAATAATAACTTTTTTACCTTTGCTCTTTGG
cttctcat CT-rich tract
tactttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttattcatgtcatttaggccagtagcttttggacactccatatggaattcatgatggaaaagacaactctcaccctactttaatttgacttctcatagACCATGCAACTTTATTTGAAACTAGGAGTGCATGCCAATTTGAAATCTGTGCTGCTGTCCAATAATAACTTTTTTACCTTTGCTCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - tcatgtc
- - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - -cactcca
- - - - - - - - - - - - - - - - - - - - - - - - - -catgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagac