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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttgtcatggttgaactgtttttttattttgcttacttttattccaggtgaatatatagcttgagttttcaaattctaacatcaagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG

Basic information

species Glycine max
transcript GLYMA08G05030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05030.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G037185_T01 (Zea mays), 3'ss of exon 4
----------------------------------gttagttttgtcatggttgaactgtttttttattttgcttactttt--attccaggtgaatatatagcttg--agttttcaaattctaacatcaagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
                                      |     | ||  || | ||    | || ||| ||  | ||||  |  |    |   |  |||  ||     || | |||   |||  |   | ||  | ||||||||||||||||||||| ||||| ||| | |||||| |||  ||||  || || || |||  ||| |||||||| ||||||||||||||||| || |||||
gtaagttaggcacattcgttacttctcatctttgacatgcacaatgataattcatctaacatgttgtttggcaaaattttccacacttatttcctcaataagttctctattatgaaaaaataattttttggtttctctgcagCATCTCTGCATATTGAATACCCTATGCTATTTGAAGTCCACAATGCAGCAGCAGAACGGACTTCGCATTGTGGTGTTCTGGAGTTCATTGCAGAAGAAGG

upper sequence: GLYMA08G05030.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 3'ss of exon 5
gttagttttgtcatggttgaac---tgtttttttattttgcttacttttattccaggtgaatatatagcttgagttttcaa--attctaacatcaagtttaatt-tgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
||||||| | | | | | ||||   |||| |   ||||    ||   ||  | ||  | |   | |   || |  | || |  ||  |||||   |  |||||  |||||| ||||| ||||||||||| || |||||||| |||||  |||||  ||||||  ||||||| || |||||||| |||||||| ||||| ||||| || ||
gttagttctttta-gttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTGCTCAGCGGGTCTCCCATTGTGGAGTTCTGGAATTCATAGCTGAAGAGGG

upper sequence: GLYMA08G05030.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S245_32V6.2 (Physcomitrella patens), 3'ss of exon 4
gttagttttgtcatggttgaactgtttttttattttgcttacttttattccaggtgaatatatagcttgagttttcaaattctaacatcaagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
  ||| | ||      |   | ||   |    | |    || | | ||||    |  ||     |    ||   | || ||| ||  |   ||||  |||||||| |||||||  |||||||||||||||||||||||| |||  ||   | |  ||  ||||     ||||||||| || ||||||||  | || ||||||||
agtagatatgctgcattgatattggaatacggtgtga--tattctgattcgtaattgattagctgtaaaagaagt-aatttcgaatgttgtgtttc-tttgcagCGTCTCTGCGCATTGATTACCCAATGTTGTTTGAAGTCCACAACCCTTCAACCTTGCGGACAAGTCATTGTGGCGTGCTGGAGTTTGTGGCAGAGGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269563|gb|BM885819.1|BM885819
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|13312371|gb|BG406022.1|BG406022
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|192296041|gb|FG993404.1|FG993404
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|37994740|gb|CF806346.1|CF806346
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|192325065|gb|FK016176.1|FK016176
EST:     TTATCATGCCTCCATCAGTCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|15816027|gb|BI788302.1|BI788302
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|254326846|gb|GR836455.1|GR836455
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|209716428|gb|BW653869.1|BW653869
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|16996631|gb|BM086003.1|BM086003
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|209712046|gb|BW674191.1|BW674191
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|14125023|gb|BG789461.1|BG789461
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|192309316|gb|FK000524.1|FK000524
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|254313714|gb|GR831343.1|GR831343
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|298172847|gb|HO019831.1|HO019831
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|17153552|gb|BM143485.1|BM143485
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|4304277|gb|AI443596.1|AI443596
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|213604953|gb|DB956328.1|DB956328
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|192330755|gb|FK022018.1|FK022018
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|24205916|gb|BU965169.1|BU965169
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|213599556|gb|DB968353.1|DB968353
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
EST: gi|23727320|gb|BU761687.1|BU761687
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaggtgaatatatagcttgagttttcaaattctaacatcaagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
                      ttttcaaattctaa  TA-rich tract